BAC Information

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BAC

Clone NameMSMg01-070J21
Chromosome16 (Build37)
Map Location 73,911,779 - 73,912,388
singlet/doubletsinglet
Overlap geneRobo2
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070J21.T7 (MSMg01no070_j21.b1)MSMg01-070J21.TJ (MSMg01no070_j21.g1)
ACCAG294595AG294596
length672686
length of high quality
(start - end)
612 (22 - 633)34 (269 - 302)
definitionCHROMAT_FILE: MSMg01no070_j21.b1 PHD_FILE: MSMg01no070_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:45 2005CHROMAT_FILE: MSMg01no070_j21.g1 PHD_FILE: MSMg01no070_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCAATATTCAGAGAATCCGCGGAATTCCTCATTTGTACCATTTGCCAC
AAATTTCCATTCATGCTAAAATTATTTTATTCGAGTATTTTCGTAACAGA
GGGAAATCCTCAGGTGAAAAATTTAATGGACCACTTTCTAAACAATTATG
TAGCAAATAGACAATCAAGTGGGATGTCTTCATACTGATCTGTTGAGTGA
GTTCTAGAAAAAAAAATTTTAAACTACCCCAAACCAAAAAGAAAATAGCT
CCAGAATTCCGTCTTAGTTACCATGTGCATGTGTTGTCCACCATCCTAGA
CCAATATCGGCCACTTAATTGCATCATTATTGGCATTAGTTCTGTCACTG
AGGCAGTTAGAATATCGACTGTATGTTAAGGACACCCTTTTCCCTATCTT
TCTCCATTCTATACCTTCTGGAACTTTCTCTTTCATGGCATTATTGTTAA
ATCTACAATGATGTTGAGGAAAATAAAATGCTGAATCCTGTCTCCCTCTT
GAAGTTTGTGACAGTGCATTGCTGTTCAAGTAGAAATCTCTCTAACTTAG
CTTTGAACATGGGAACTTTTCAGTGTTGATTTTCCACCCCACACCATGAT
GTGCACTGCGATGCTAAGCCTGTTTTTGTGCTTTGTGACCATTAAATAAA
TGCTCGTGAACAATTATAAGCT
CGATGCAGTGGGAGGCCTGGNGGCGCCTGTTTTCTTATCTGCGNGAACNA
NAGAAGGTTACAGCACCGACGGGNNCCCCNAAAGCCNNNANACACAAAAG
CCCGGACNCAGGGAACACCCCCAAGGAAAGAACAAGGGCNAAGAACCCCC
NCAAAAGAGGGNAAGGGAAANAGAACAAAAGAGAACACAGACAGAACCAC
AAAAACAACAAGGCAGGGANAAGACCNAANAAGCCACAGACCCCCGTATT
TTTAACCCACAGACCGACTTTTTTTTAGTGCAGAAGTAAAGATAGAGCCT
GCAAGCAATTTTTTTTTTTTTGTACAGCCGGCCACNCAAAAAGGCNACCC
CGCACAATGCACCCCCCCCAACNNGACCCCNCNAANNNGAAGNNCAACAA
AANNGANCCAAACGAACCAGAAAAAAAACGAAAAANCCGAACCAGGAGCC
GACGCCCANNCCCACGCAAACGGACANACAGCCAAACCCCCAGCGGGCAA
CNACGAAGGCCGAGGCAGCACCANAGAACACGCCAACCCCGGCAAAAAAG
GCACGAAGCCGNCCACCAAACGGGAGGGGCAAACGACCGCAAAAGCAGCC
CAAGGAGACCACGGAGCCGAAAACCGGAGGAGACCCCAAGCCAGCGGTTT
TTTTTTTCTAGGACAACCGACCTTGGCGACATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_j21.b1 MSMg01no070_j21.b1 CHROMAT_FILE:
MSMg01no070_j21.b1 PHD_FILE: MSMg01no070_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:45 2005
         (612 letters)



>mm_chr16_73911577_73912588
          Length = 1012

 Score = 1156 bits (598), Expect = 0.0
 Identities = 607/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcctcatttgtaccatttgccacaaatttccattcatgctaaaattattttattcg 62
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcctcatttgtagcatttgccacaaatttccattcatgctaaaattattttattcg 262

                                                                       
Query: 63  agtattttcgtaacagagggaaatcctcaggtgaaaaatttaatggaccactttctaaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtattttcgtaacagagggaaatcctcaggtgaaaaatttaatggaccactttctaaac 322

                                                                       
Query: 123 aattatgtagcaaatagacaatcaagtgggatgtcttcatactgatctgttgagtgagtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aattatgtagcaaatagacaatcaagtgggatgtcttcatactgatctgttgagtgagtt 382

                                                                       
Query: 183 ctagaaaaaaaaattttaaactaccccaaaccaaaaagaaaatagctccagaattccgtc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctagaaaaaaaaattttaaactaccccaaaccaaaaagaaaatagctccagaattccgtc 442

                                                                       
Query: 243 ttagttaccatgtgcatgtgttgtccaccatcctagaccaatatcggccacttaattgca 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 ttagttaccatgtgcatgtgttgtccaccatccaagaccaatatcggccacttaattgca 502

                                                                       
Query: 303 tcattattggcattagttctgtcactgaggcagttagaatatcgactgtatgttaaggac 362
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 503 tcattattggcattagttctgtcaccgaggcagttagaatatcgactgtatgttaaggac 562

                                                                       
Query: 363 acccttttccctatctttctccattctataccttctggaactttctctttcatggcatta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acccttttccctatctttctccattctataccttctggaactttctctttcatggcatta 622

                                                                       
Query: 423 ttgttaaatctacaatgatgttgaggaaaataaaatgctgaatcctgtctccctcttgaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgttaaatctacaatgatgttgaggaaaataaaatgctgaatcctgtctccctcttgaa 682

                                                                       
Query: 483 gtttgtgacagtgcattgctgttcaagtagaaatctctctaacttagctttgaacatggg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtttgtgacagtgcattgctgttcaagtagaaatctctctaacttagctttgaacatggg 742

                                                                       
Query: 543 aacttttcagtgttgattttccaccccacaccatgatgtgcactgcgatgctaagcctgt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aacttttcagtgttgattttccaccccacaccatgatgtgcactgcgatgctaagcctgt 802

                     
Query: 603 ttttgtgctt 612
           ||||||||||
Sbjct: 803 ttttgtgctt 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)