Query= MSMg01no072_d16.b1 MSMg01no072_d16.b1 CHROMAT_FILE:
MSMg01no072_d16.b1 PHD_FILE: MSMg01no072_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:53 2005
(481 letters)
>mm_chr16_62900530_62901412
Length = 883
Score = 870 bits (450), Expect = 0.0
Identities = 471/478 (98%), Gaps = 2/478 (0%)
Strand = Plus / Plus
Query: 6 gaattcatttagttac-cataaaggtaatttaagcacttcataagaagagaggctccggt 64
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 206 gaattcatttagttacatataaaggtaatttaagcacttcataggaagagaggctccggt 265
Query: 65 gctaccgactttgcaaagccattgttctgtgttcagaattggctactatactcctgtggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctaccgactttgcaaagccattgttctgtgttcagaattggctactatactcctgtggt 325
Query: 125 tccgtaagaggaacagtagctatgcaaagaaatctgcagctcttaatattatatcttatc 184
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 326 tccgtaagaggaacagcagctatgcaaggaaatctgcagctcttaatattatatcttatc 385
Query: 185 tttgcttttcagaaatatctttatgatttccaaaataaatccattattttgcactgcatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttgcttttcagaaatatctttatgatttccaaaataaatccattattttgcactgcatt 445
Query: 245 tccagccctggttatgagaaagatggagaatctggttttcattctctttacacctaactc 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tccagccatggttatgagaaagatggagaatctggttttcattctctttacacctaactc 505
Query: 305 ttccatcattgctcctcactcttttttt-ctttggatgtaaataatctctcaggttagct 363
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 506 ttccatcattgctcctcactcttttttttctttggatgtaaataatctctcaggttagct 565
Query: 364 ttttgtgtgtggctagtatattgcttttggctttctctatgaatcttcatctcccaaagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttttgtgtgtggctagtatattgcttttggctttctctatgaatcttcatctcccaaagt 625
Query: 424 tttccttttttctcctttcatattctgtgtcattggactgcttggattactataagac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttccttttttctcctttcatattctgtgtcattggactgcttggattactataagac 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 883
Length adjustment: 10
Effective length of query: 471
Effective length of database: 873
Effective search space: 411183
Effective search space used: 411183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_d16.g1 MSMg01no072_d16.g1 CHROMAT_FILE:
MSMg01no072_d16.g1 PHD_FILE: MSMg01no072_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:53 2005
(548 letters)
>mm_chr16_63034839_63035786
Length = 948
Score = 1015 bits (525), Expect = 0.0
Identities = 543/549 (98%), Gaps = 1/549 (0%)
Strand = Plus / Minus
Query: 1 tagagatagcag-aaaaaatagaagtaactgaaataggagaaggatgggaatggaaggca 59
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 tagagacagcagaaaaaaatagaagtaactgaaataggagaaggatgggaatggaaggca 853
Query: 60 gaaggaagaaaaaaagaggaaaagagggtgggaaggagcaagaagggaacaaaggaaaga 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaaggaagaaaaaaagaggaatagagggtgggaaggagcaagaagggaacaaaggaaaga 793
Query: 120 aagaaggaaggaaagatagaaggaaggcagatagaaaggaaggattaggtatcaaagaaa 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 792 aagaaggaaggaaagatagaaggaaggaagatagaaaggaaggattaggtatcaaagaaa 733
Query: 180 taatagtgtaatgaatcatgtttatttgccaaaacattattgtgatatttaagaatagaa 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcatagtgtaatgaatcatgtttatttgccaaaacattattgtgatatttaagaatagaa 673
Query: 240 aagaaaaaggctgatcttagaggctaacacacctaggacatcatcactcagatactttaa 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aagaaaaaggctgatcatagaggctaacacacctaggacatcatcactcagatactttaa 613
Query: 300 tgcaagtcagaggacattgtgcccttaacaaggacttaatatcataaagtatataataaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgcaagtcagaggacattgtgcccttaacaaggacttaatatcataaagtatataataaa 553
Query: 360 ggtttaaatatttaccaaaagacaaaccaatcagcgacaaacaataggaattagtggcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggtttaaatatttaccaaaagacaaaccaatcagcgacaaacaataggaattagtggcct 493
Query: 420 tatattgttctgcaactaactgttcctgtacttatatgaaatgaggcacagaaggcaaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tatattgttctgcaactaactgttcctgtacttatatgaaatgaggcacagaaggcaaga 433
Query: 480 aatcagactggggattttaagcctggggttagagataagagtacttgcctagagtgcaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aatcagactggggattttaagcctggggttagagataagagtacttgcctagagtgcaca 373
Query: 540 aggaaggca 548
|||||||||
Sbjct: 372 aggaaggca 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
