BAC Information

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BAC

Clone NameMSMg01-072L16
Chromosome16 (Build37)
Map Location 54,324,762 - 54,325,110
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433027, LOC100043442
Downstream geneLOC100043449, LOC667927, LOC436421, Zpld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072L16.T7 (MSMg01no072_l16.b1)MSMg01-072L16.TJ (MSMg01no072_l16.g1)
ACCAG296198AG296199
length732725
length of high quality
(start - end)
360 (41 - 400)321 (72 - 392)
definitionCHROMAT_FILE: MSMg01no072_l16.b1 PHD_FILE: MSMg01no072_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:34 2005CHROMAT_FILE: MSMg01no072_l16.g1 PHD_FILE: MSMg01no072_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCCGTATACGACTCCTATTTCGAGAGGATGCCGCGGAATTC
TTTTTGATTACAATTAGTCATAAATATAGTTGGGGTTTAGAAAGAAGGAC
TAGCAGGATAAGTACCCAGAACTGGTTGGGTAAAATCCACCCAGTTTAAA
ATCTCATGCATCCTCTGAAAAATTATCAGTACAAAGCAAAAGAGACTAAG
AGTGGTATGATATTTAGTTTCTTTGTGGAAGAATCTAGAATATTTGTGAT
TAAGTTTATATTCACAGTAGACAAGGAAGTAGAGAAATGATTTGCTAAGC
AGTGGCTGGCTGGCATTGTTATAAAGATGTGACCAAAGCAGGGAAAGGAA
ACATCTCCCTCCACATGAAAAAAAAAATAGCACCGATATTTATATTCTAA
AGACCGAATCTAAGAAAATAGGTATTTCTATCTCACTGATATTCCTCTTG
GGGGTGGGGGAATCTTTTTATCAATGTTCAAAATACCCTTCATTTGCTCA
ACCCAAATTTGTGAAACTGTAAACCCAAAATTTCAGATTAAAAAATAATA
TTTAGTTTGGACATAAGTCCTTTATATAGTACAGGCTGGCCATTAACTTC
CGTGGCATAGAGAGTAACCTTTGAACTTCTGATCATTCTCCTGCTCACAA
TGTCTAGGATCAGACGTTGTGTGTTTGGTTTCCTTCTTCATTTAATGTTT
GTTACTTAACCTTTTATGTGCTGGTCTATCAC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCCCTTGTCCTACAAGCCAGGACAAAAT
CCAATCGTTAAGAATGTTTTGGAAGGTGGGAATGAAGTCACTACTGTTGC
TTAGCTAAATTGTTATGGAATCAAGCTACTTAGTGAACATTTCTAACTCT
AGACAAATGCAATAGCTACCCTTAATCTGAGAAGATTTTTTTTTTGTAGT
TACTTGTGGTGAATTAAGAGAACAAATTCTTTTTTTTTTTTTTAAGCGAA
CTTGATGCGAGATTTATTATTGAACGATTTGGTAGGGTATACGAGAGAAC
TATTGAAGCCTTCAGGAATGCAGGGCTCTCCACTTGTCCAGAGGAACCCG
GAATTGGGGGAAATATTTGACACCACAGCCATCAGGAATGAGCCGCTTCT
CAGCAACCATGTCTTCAAATTCATCTGCATTAAACTTGGTGAAGCCCCAC
TTCTTTGAGATGTGGATCTTCTGGCGGCCAGGGAACTTGAACTTGGCTCT
TCGCAGAGCCTCAATCACATGTTCCTTGTTCTGCAACTTGGTTCGGATGG
ACATGATGACCTGGCCAATGTGAACTCTGGCCACTGTGCCCTGGGGCTTC
CCAAAGGCACCACGCATCCCTGTCTGGAGCCTGTCAGCCCCAGCACAGGA
CAACCATCTTGTTGATACGGATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_l16.b1 MSMg01no072_l16.b1 CHROMAT_FILE:
MSMg01no072_l16.b1 PHD_FILE: MSMg01no072_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:34 2005
         (360 letters)



>mm_chr16_54324458_54325218
          Length = 761

 Score =  551 bits (285), Expect = e-161
 Identities = 329/349 (94%), Gaps = 10/349 (2%)
 Strand = Plus / Minus

                                                                       
Query: 22  aattagtcataaatatagttggggtttagaaagaaggactagcaggataagtacccagaa 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aattagtcataaatatagttggggtttagaaagaaggactagcaggataagtacccagaa 594

                                                                       
Query: 82  ctggttgggtaaaatccacccag---------tttaaaatctcatgcatcctctgaaaaa 132
           ||| ||||| |||||||||  ||         ||||||||||||||||||||||||||||
Sbjct: 593 ctgtttgggaaaaatccactgagtgttttctctttaaaatctcatgcatcctctgaaaaa 534

                                                                       
Query: 133 ttatcagtacaaagcaaaagagactaagagtggtatgatatttagtttctttgtggaaga 192
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttatcagtacaaaacaaaagagactaagagtggtatgatatttagtttctttgtggaaga 474

                                                                       
Query: 193 atctagaatatttgtgattaagtttatattcacagtagacaaggaagtagagaaatgatt 252
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 473 atctagaatatttgtgattaagtttatattcacagtagacagggaagtagagaagtgatt 414

                                                                       
Query: 253 tgctaagcagtggctggctggcattgttataaagatgtgaccaaagcagggaaaggaaac 312
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 413 tgctaagcagtggctggctggcattggtagaaagatgtgaccaaagcagggaaaggaaac 354

                                                            
Query: 313 atctccctccacatgaaaaaa-aaaatagcaccgatatttatattctaa 360
           ||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 353 atctccctccaaatgaaaaaagaaaatagcaccgatatttatattctaa 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 761
Length adjustment: 9
Effective length of query: 351
Effective length of database: 752
Effective search space:   263952
Effective search space used:   263952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)