BAC Information

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BAC

Clone NameMSMg01-073A01
Chromosome16 (Build37)
Map Location 30,749,611 - 30,750,026
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623
Downstream geneLOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073A01.T7 (MSMg01no073_a01.b1)MSMg01-073A01.TJ (MSMg01no073_a01.g1)
ACCAG296407AG296408
length772695
length of high quality
(start - end)
---491 (80 - 570)
definitionCHROMAT_FILE: MSMg01no073_a01.b1 PHD_FILE: MSMg01no073_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:56 2005CHROMAT_FILE: MSMg01no073_a01.g1 PHD_FILE: MSMg01no073_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGCCTCATAACTGCGCCGCTATACGACTCCTATATGGAGAGATCCGCGG
AATTCTCTTGACTCACTTGTAACTGCCATGGTACCTAAGAACACTATTTC
ATGGCTGATACATTCTCTCCACCAGAATGCAGTTTCTGGCTCATTTAAAT
AGGTTCACACCCCAACTATCACCTTAAATGCATTTTTTAAAATAACAGAC
CTAACTGGGTCGGAGGCGGCCCATACCTTTATTAATTTATTTATTCACAT
TATTATTTATTTAACGCATATGAATCATACTGTAACTGCTTTCTTACCCC
CCACAACACCGCCCCTCGTCTCCATATCCGACTGGTCTGTGAGCCACCAC
TTCGCTCGCTGGCTTTTTTTTTTCCCCCCCCCCCCCCCACACAAAATTTC
TTCTGTCCTTACTTTGCTTCATCACTCTTCCAACAAATAACAAATACCTG
TGATTTTCTCTCAACTCCTCACTCTGACACTCTAGAATCCCCCCTGCGCT
AGCGCAGCCGCCGGTCATGTCTTGCTCAACGCACCATCTCCAACCTCATT
CTTGTTTATCAATCCCACACACACCCCATAAATTCGTTTCTACTGCCGCC
CTACTCTTCCCACGAAGTATTCTTACATTTACCTTATTCTCCACTCCTAC
TACACCCGTGCATCCCTCCAATCCTACTGACGATCCTGCAGGTTCGCCGA
GCCCTCTCCCTCGTACTTCTCTCCCTCCTGTATCCGCCTTTTGCATCTAT
CCTTCATCTCATCTACCGCTCC
TTTTTTTCGATGCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGTCGCTGGGAGGAACCA
ACTGTCACCCTTCTCTCTGCCAGAGTCTTTTGTAAAAGCATCCATGGACC
CAGGCACCAGAGTCTCCTTTGAGAGGCACTATACCTTTGTGTCCCTCCAG
CCAAAGGGTTGGCTAAGTGCTGAGGGAAAGATTCAGGACACAGACTGGAA
GGCCCGGGTCAAGTCTCAGATCTGCCATCACCTTGCATGCCGTTTGGCGT
GTTTATTTTGCCTGTGGACCCTGCTTGTCTCATCTGTAGAATGAGAATTG
GTTGAGTCCAGACGGTGAGACTCTGGTACTCCTACAAAGTGCTCACAAGA
GGGTTGCACCTGTGATTTCCAAGAGCCAGGTCTCTAGAAAGAGCTGATTG
GATGAGAGAGCAAGCCCTACCACTTTCCACTAACAAGCTATGGCTTCCAC
AGATTAAGGCTCTTGTGATGAACAGAAACAGACAGGGGTATCGGCATTCA
TGCCTTTCTTCAGGGAGTAACGGGCAGATTGGGCTGGAGAGATGGTTTCG
TGGGTAAGGGCGATGGTTACACAATCCTGAGAATGGGGTTAGAGTCCCAG
CATCCACGTAACAAACTGGATTTCATGTGCATGCTTGTAACTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_a01.g1 MSMg01no073_a01.g1 CHROMAT_FILE:
MSMg01no073_a01.g1 PHD_FILE: MSMg01no073_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:56 2005
         (491 letters)



>mm_chr16_30749136_30750026
          Length = 891

 Score =  774 bits (400), Expect = 0.0
 Identities = 412/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 76  caccagagtctcctttgagaggcactatacctttgtgtccctccagccaaagggttggct 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 caccagagtctcctttgagaggcactatacctttgtgtccctccagccaaagggttggct 832

                                                                       
Query: 136 aagtgctgagggaaagattcaggacacagactggaaggcccgggtcaagtctcagatctg 195
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 831 aagtgctgagggaaagattcaggacacagactggaaggcccaggtcaagtctcagatctg 772

                                                                       
Query: 196 ccatcaccttgcatgccgtttggcgtgtttattttgcctgtggaccctgcttgtctcatc 255
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 771 tcatcaccttgcatgccgtttggtgtgtttattttgcctgtggaccctgcttgtctcatc 712

                                                                       
Query: 256 tgtagaatgagaattggttgagtccagacggtgagactctggtactcctacaaagtgctc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgtagaatgagaattggttgagtccagacggtgagactctggtactcctacaaagtgctc 652

                                                                       
Query: 316 acaagagggttgcacctgtgatttccaagagccaggtctctagaaagagctgattggatg 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 acaagagggttgcacctgtgatttccaagagccaggtctctagaaagagctgattggatg 592

                                                                       
Query: 376 agagagcaagccctaccactttccactaacaagctatggcttccacagattaaggctctt 435
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 591 agagagcaagccctaccactttccactaacacgctatggcttccacagattaaggctctt 532

                                                                   
Query: 436 gtgatgaacagaaacagacaggggtatcggcattcatgcctttcttcagggagtaa 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtgatgaacagaaacagacaggggtatcggcattcatgcctttcttcagggagtaa 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)