BAC Information

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BAC

Clone NameMSMg01-073A10
Chromosome16 (Build37)
Map Location 80,178,016 - 80,178,394
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073A10.T7 (MSMg01no073_a10.b1)MSMg01-073A10.TJ (MSMg01no073_a10.g1)
ACCAG296425AG296426
length697698
length of high quality
(start - end)
122 (142 - 263)380 (78 - 457)
definitionCHROMAT_FILE: MSMg01no073_a10.b1 PHD_FILE: MSMg01no073_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:58 2005CHROMAT_FILE: MSMg01no073_a10.g1 PHD_FILE: MSMg01no073_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGATCTTTCGAAAAATTTATCATGAATGGGTGTTGGATT
TTGTCAAATGCTTTCTCTAGATTTAAGGAGAAGATCTTGTGGTTTTTGGC
TTTGAGTTTGTTTATATAATGTATTACATTGATGGATTCCTGTATATTGA
ACCATCCCTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGTATGATT
GTTTTGATGTGTTCTTGGATTCGGTTATAGAGAACTTTATTGAGAATTTT
TGCTTCGAAATTCATAAGGGAAATTGGTCTGAAGTTCTCCATCTTTTTGG
GTCTTTTTGTGGTTTACGCATCATAGTAATTGCTGCTTCATATAATGAAT
TGGTTAGAGTACCTTCTGCTCCTATTTTGTGCAAGAGTTTGTGAAAAACT
GTAATTATATCTTCTTTGAATGTCTGATAGAACTCTGCTCTAAACGCATC
TGGTCCTGTACTTTTTTTGGCTGTTACACAATTAATGACTGCCTCTATTT
ATTTACGGGATATAGGATTGTTCTGATCTCTATCCTGATCTTGATTTAAC
TTTGGCACCTGTTCTCTGTTTACAATCCTGCCCTTTTCTACCTTGTTCTT
CCGCTTTGTTGACTATATCCTTTTGCACAAATATCCTGATGTCTCTC
NTTTCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAATCACACCCCACTGTTTCGAG
AATTGCAGTTAACTCTCATATGCAAATATTTCACGAACAATTATAAGTTC
CATTCAGCACAATGAATTTGCCTCTTTAAAGAGTCTATGGCAAATTGGCC
CTTTGTATCTCTACTTAATTATTACTAGGCTTTTAACAGAGCAGTTTTTT
CATCTTTATGTTCAAAGGGGATTGAAAATGCCTTAAACACTCAAAGGTGT
TTCTTTAGAAGAAAATAGGCTTTGCTAGAATCTGTGACCCCTTTGCAAGG
TTGTTTAAAGATATTTAAAATGGATAAAATTATGCTTGTGTACAATAGGT
TTCATTTCTAAATAGTTATTTTTGTCTCCTATAACAGTGGAAAGAAACAT
GTAAATGTGGCAGGTTGTGAACCTTATTTGTATTGCTGTTCCTATGGCTA
TTATTTCATACAATGATAGAACATTAGTGGACTTATAACTATAGAGATTG
GAAAATTTTATTTGTAATATATTCACTGAGAATAACAATGTCCCTATATC
ACAATTATCCGCCATCTAACACGCTAATGTTGTAACTTCCTTCAAGACTT
ACTGTTCCGAAAAGAACTATAGAGTACTGAAATTCCCTTATCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_a10.g1 MSMg01no073_a10.g1 CHROMAT_FILE:
MSMg01no073_a10.g1 PHD_FILE: MSMg01no073_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:58 2005
         (380 letters)



>mm_chr16_80177816_80178596
          Length = 781

 Score =  694 bits (359), Expect = 0.0
 Identities = 374/379 (98%), Gaps = 1/379 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatcacaccccactgtttcgagaattgcagttaactctcatatgcaaatatttcacgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 caatcacaccccactgtttcgagaattgcagttaactctcatatgcaaatatttcacgaa 520

                                                                       
Query: 61  caattataagttccattcagcacaatgaatttgcctctttaaagagtctatggcaaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 519 caattataagttccattcagcacaatgaatttgcctctttaaagagtctatagcaaattg 460

                                                                       
Query: 121 gccctttgtatctctacttaattattactaggcttttaacagagcagttttttcatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gccctttgtatctctacttaattattactaggcttttaacagagcagttttttcatcttt 400

                                                                       
Query: 181 atgttcaaaggggattgaaaatgccttaaacactcaaaggtgtttctttagaagaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgttcaaaggggattgaaaatgccttaaacactcaaaggtgtttctttagaagaaaata 340

                                                                       
Query: 241 ggctttgctagaatctgtgacccctttgcaaggttgtttaaagatatttaaaatggataa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggctttgcaagaatctgtgacccctttgcaaggttgtttaaagatatttaaaatggataa 280

                                                                       
Query: 301 aattatgcttgtgtacaatagg-tttcatttctaaatagttatttttgtctcctataaca 359
           |||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||
Sbjct: 279 aattatgcttgtgtacaataggtttttatttctaaatagttatttctgtctcctataaca 220

                              
Query: 360 gtggaaagaaacatgtaaa 378
           |||||||||||||||||||
Sbjct: 219 gtggaaagaaacatgtaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 781
Length adjustment: 9
Effective length of query: 371
Effective length of database: 772
Effective search space:   286412
Effective search space used:   286412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)