Query= MSMg01no073_j03.b1 MSMg01no073_j03.b1 CHROMAT_FILE:
MSMg01no073_j03.b1 PHD_FILE: MSMg01no073_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:40 2005
(605 letters)
>mm_chr16_54217195_54218200
Length = 1006
Score = 994 bits (514), Expect = 0.0
Identities = 575/600 (95%), Gaps = 9/600 (1%)
Strand = Plus / Minus
Query: 7 gaattcatagagtcactcatcgaaac-aaatcatatttaacgtgaggataagggccctca 65
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct: 738 gaattcatagagtcagtcatcgaaacaaaatcatatttaacatgaggataagggccccca 679
Query: 66 ggccaactgtgttagatccaggattgcatctgacgtgctgcaaaggagtcatgtttagtc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 678 ggccaactgtgttagatccaggattgcatctgacgtgctgcaaaggagtcatgtttattc 619
Query: 126 taaaatgctcattctaacgtgtatttaaacagagtctctggcttgagctgctttcatata 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taaaatgctcattctaacgtgtatttaaacagagtctctggcttgagctgctttcatata 559
Query: 186 tgcaatataatggatacactaatgaaagtattgaagaggtatcaagggctatagaacaaa 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 558 tgcaatataatggatacactaatgaaagtattgaagaggtatcaagggctatagcacaaa 499
Query: 246 cgtctcttgttaatggaaatgaccgtatgcctgttaataaggacattaatattcacatga 305
||||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||
Sbjct: 498 cgtctcttgttaatggaaatggcagtatgcctgttaataaggacattaataatcgcatga 439
Query: 306 atttattcactgtgttaaaatgagtttatattcacggctgttttgcatattttaaaataa 365
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 438 gtttattcactgtgttaaaatgagtttatattcatggctgttttgcatattttaaaataa 379
Query: 366 ttgaatattcaccatattacattatgcaactattgcatatataagcataaatattatttg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgaatattcaccatattacattatgcaactattgcatatataagcataaatattatttg 319
Query: 426 caaaacattaataagcattcacatgtgctctcccacaattctcaagcatagtaccttggt 485
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 318 caaaacattaataagcattcacatgtgctctcccacaattctccagcatagtaccttggt 259
Query: 486 gtctccaacactgataggttgaaaggtctaccatgaaagccaataatgcttatactatta 545
|||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 258 gtctccaacactgatatgttgaaaggtctaccatgaaagccaataatgc--------tta 207
Query: 546 caggtattcacaattttttaattttcaaaaatttccaaaacttatttatatccatttaca 605
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 206 caggtattcacaattttttaattttccaaaatttccaaaacgtatttttatccatttaca 147
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space: 592620
Effective search space used: 592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_j03.g1 MSMg01no073_j03.g1 CHROMAT_FILE:
MSMg01no073_j03.g1 PHD_FILE: MSMg01no073_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:40 2005
(502 letters)
>mm_chr16_54039641_54040543
Length = 903
Score = 911 bits (471), Expect = 0.0
Identities = 495/503 (98%), Gaps = 1/503 (0%)
Strand = Plus / Plus
Query: 1 ttagtgctttggacaaaaggagctactacaatgctccttgtcaaaaatactgtttctata 60
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagtactttgcacaaaaggagctactacaatgctccttgtcaaaaatactgtttctata 260
Query: 61 aaaattttactgactcaatcacccacccatatagtgttgtataaccgaatacagcatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaattttactgactcaatcacccacccatatagtgttgtataaccgaatacagcatgta 320
Query: 121 tggtatgactgagtagtttggtgtgttttgtctaaaacctaacagtgtaaaacctaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtatgactgagtagtttggtgtgttttgtctaaaacctaacagtgtaaaacctaactg 380
Query: 181 tgagtataaggattgtctctgtcttttttgcctactggtgagcccatttttctcttactg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtataaggattgtccctgtcttttttgcctactggtgagcccatttttctcttactg 440
Query: 241 ggttgccttgtctatccttcatgtgatggttttattttagcttgttgggctgtttgattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttgccttgtctatccttcatgtgatggttttattttagcttgttgggctgtttgattg 500
Query: 301 atgtccctggaagtccagctctattcataggttaggcagtggtggtatgaatctggggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtccctggaagtccagctctattcataggttaggcagtggtggtatgaatctggggaa 560
Query: 361 gagcaggaatggtcatgatggagggactgtggtcaggatgtaatatgagacaattaaaaa 420
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gagcagggatggtcatgatggagggactgtggtcaggatgtaatatgagagaattaaaaa 620
Query: 421 aa-tcactaatgctactacatcagtaaaaactacatgttgctacacatattacccattat 479
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 aaatcactaatgctactacatcagtaaaaactacatgttgttacacatattacccattat 680
Query: 480 gctcattattacgattatatgag 502
| |||||||||||||||||||||
Sbjct: 681 gttcattattacgattatatgag 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
