Query= MSMg01no073_k03.b1 MSMg01no073_k03.b1 CHROMAT_FILE:
MSMg01no073_k03.b1 PHD_FILE: MSMg01no073_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:45 2005
(313 letters)
>mm_chr16_64094906_64095618
Length = 713
Score = 567 bits (293), Expect = e-166
Identities = 305/309 (98%)
Strand = Plus / Minus
Query: 5 gaattccacaatatccaatgcattactgtttctgcaaaacaacttttattaaagttgtat 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaattccacaatatccaatggattactgtttctgcaaaacaacttttattaaagttgtat 361
Query: 65 aaaaattcattatgcataatactacattttcttcgtctagcattgaatacttaaattact 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 360 aaaaattcattatgcataatactacattttcttcatctagcattgaatacttaaattact 301
Query: 125 tttagtttctcattattatgtaaatattcaaacattaatttcaatttctttctatactaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tttagtttctcattattatgtaaatattcaaacattaatttcaatttctttctatactaa 241
Query: 185 aagtgaggatatggtgtcacataaatactaaatttattttttttaatttattttttaatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aagtgaggatatggtgtcacataaatactaaatttattttttttaatttattttttaatt 181
Query: 245 aggtattttcttcatttacatttcaaatgctatcccaaaagtcccccagaccctcccctg 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 180 aggtattttcttcatttacatttcaaatgctatcccaaaagtaccccagaccctcccctg 121
Query: 305 cccctcccc 313
||||||||
Sbjct: 120 tccctcccc 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_k03.g1 MSMg01no073_k03.g1 CHROMAT_FILE:
MSMg01no073_k03.g1 PHD_FILE: MSMg01no073_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:45 2005
(603 letters)
>mm_chr16_63933718_63934719
Length = 1002
Score = 1151 bits (595), Expect = 0.0
Identities = 601/603 (99%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 1 agtgcctgagcaaaatgctggcttgacagacttttggagaggcttcagtttatccttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcctgagcaaaatgctggcttgacagacttttggagaggcttcagtttatccttcaa 260
Query: 61 acgaggagagcatggcagaaacatgggcagctcccactcttaggcaggtggagctctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgaggagagcatggcagaaacatgggcagctcccactcttaggcaggtggagctctgaa 320
Query: 121 aatagaaaaatccacactcttgtcaataccatttgaagctctccctcccagcaagttcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagaaaaatccacactcttgtcaataccatttgaagctctccctcccagcaagttcac 380
Query: 181 atgaaaggagacgttccttggtcgtgactcacatatcctttggcttcccatgttaatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaaaggagacgttccttggtcgtgactcacatatcctttggcttcccatgttaatctg 440
Query: 241 tggttctccagccaatttggggattaacataaatctgcccttgtcactggctcagggtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttctccagccaatttggggattaacataaatctgcccttgtcactggctcagggtaa 500
Query: 301 agagcctgcaaaactaatacctccattgctaaaccccaataatgcatcattttttttatc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 agagcctgcaaaactaatacctccattgctaaaccccaataatgcatcattttttt-atc 559
Query: 361 tgggatttcatcctcagtcagtgcaggaatagacagaaatacactggagacaggaggtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgggatttcatcctcagtcagtgcaggaatagacagaaatacactggagacaggaggtgc 619
Query: 421 tcagcgtggatctggtttgtttcatgtgtgtggacatcactggaaaaggaacagttcacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcagcgtggatctggtttgtttcatgtgtgtggacatcactggaaaaggaacagttcacc 679
Query: 481 ttaaaattaaagcatcttttcagttgaatatccccctcacttgttggataacagtccttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 ttaaaattaaagcatcttttcagttgaatatccccctcacttgttggataacattccttt 739
Query: 541 gaacattatagcttactcttgtgagattagaacaaaggcattactgaattcatgggcatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaacattatagcttactcttgtgagattagaacaaaggcattactgaattcatgggcatg 799
Query: 601 gtt 603
|||
Sbjct: 800 gtt 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1002
Length adjustment: 10
Effective length of query: 593
Effective length of database: 992
Effective search space: 588256
Effective search space used: 588256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
