BAC Information

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BAC

Clone NameMSMg01-073M14
Chromosome16 (Build37)
Map Location 19,186,205 - 19,186,337
singlet/doubletsinglet
Overlap geneIgl
Upstream geneEG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1
Downstream geneIgl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073M14.T7 (MSMg01no073_m14.b1)MSMg01-073M14.TJ (MSMg01no073_m14.g1)
ACCAG296999AG297000
length688693
length of high quality
(start - end)
336 (47 - 382)132 (158 - 289)
definitionCHROMAT_FILE: MSMg01no073_m14.b1 PHD_FILE: MSMg01no073_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:58 2005CHROMAT_FILE: MSMg01no073_m14.g1 PHD_FILE: MSMg01no073_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGTATCTATXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGC
GGAATTCATAGCCATTACGCCTCAAGAGCTCCATACCAAGATCCTGGTCA
GAAACTTCTATGTCCCATCCTCCAGATTAGAATCACTGGTGAGCCTTCCA
ATTCTGGATTGTGGTTCATTCCGGATATAGTCAAGTTGACAATCAGGAAT
AGCCAATACACAAACCCACCTACTCCTGCATCCTGGTCCTGACATTCCCC
TATACTGGGGCATAGAACTTTCACAGGACCAATGTACTCTCCTCCATTTG
ATGATCGACTAGGCTATCCTCTGCTACATATGCAGCTAGAGACATGAGTC
CCACCATGTGTTTTCTTTGGTTGTTGATTTAGTCTTAGGGTAGTTCTAGG
GGTTACTGTTTATTTCATGTTATTGTTGCTCCTATGGTTCTGCAAACCCC
ATTCATTTCCTTGGAGACTTTCTCTAGCTCCTTAATTGGAGACCCTGTGC
TCTGTCCAATGGATAACTGTGAGCATCCACTTCTGTATTTGTCTGGTACT
GGCTGAGCCTCTGAGGAGACTGCTATTTCATGCTCCTGACCGCTTAAGCT
TTGTTGGCATTCTGCATAACGTCTGAGTTTGGTGGTTGTTTATGTTATGA
ATCCTAGTTGCGACAGTCCCTTTTATGGTCTTTCTTTT
TTTTCGATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGACAGACTTACAGCTGGTCG
TGTCAGTGCTTCTATACACCCCCAGGTACTTTGGTAGTCAAAGCTGAAGC
AGAGGGAGTTCATGGCCAGCTTAAGCAATGTATCAAACATACTGTTTCAC
AATAAAAGTAAAGAATAGGTCTTGGGATGAAAGTCAGAGATAAATTCTGG
CTTACCATATTAAAGTCTCAGGGTCCAACCCCAAATAATGAGAGGGAGTT
TGCTTAATGCCCCACTGGTATCTACTAATGTGATTTTTATAGCTTTCGAA
ATATTTAAAGTAAACAATTTATTCCTACATCCATGCAATTATGTTAAAAT
CTTTTCATATCTCTGTTTTCACTAAAGGGTTTTTGCTTCACAACGTATAT
TATGATTTGTCTTATGCGTTGTACTGTCTATGCCTCCCCCCCCGTACTTC
CATTCCTTATATCTCTCTCCTCTCTATCTACCTTTCTTATTACTCGAATT
ACTGTGTCCACGCACCCTCTTGCCGGGCCCAAGTTTTTCAGCTTCCCTAA
TTTATCTCCTATACCACACTTCATACCATTGCCCACCTTACCCTTTTCCC
TCCATTCATCCCACTATCTTCCATGATCACCCCTTTTACCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_m14.g1 MSMg01no073_m14.g1 CHROMAT_FILE:
MSMg01no073_m14.g1 PHD_FILE: MSMg01no073_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:58 2005
         (132 letters)



>mm_chr16_19186005_19186537
          Length = 533

 Score =  219 bits (113), Expect = 7e-62
 Identities = 128/133 (96%), Gaps = 1/133 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcatggccagcttaagcaatgtatcaaacatactgtttcacaataaaagtaaagaata 60
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 201 gttcatggccagcttaagcaatgtatcatacatactgtctcacaataaaagtaaagaata 260

                                                                       
Query: 61  ggtcttgggatgaaagtcagagat-aaattctggcttaccatattaaagtctcagggtcc 119
           |||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 261 ggtcttgggatggaagtcagagattaaactctggcttaccatattaaagtctcagggtcc 320

                        
Query: 120 aaccccaaataat 132
           |||||||||||||
Sbjct: 321 aaccccaaataat 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 533
Length adjustment: 8
Effective length of query: 124
Effective length of database: 525
Effective search space:    65100
Effective search space used:    65100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)