BAC Information

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BAC

Clone NameMSMg01-073P18
Chromosome16 (Build37)
Map Location 71,664,970 - 71,665,078
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039231
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073P18.T7 (MSMg01no073_p18.b1)MSMg01-073P18.TJ (MSMg01no073_p18.g1)
ACCAG297146AG297147
length689711
length of high quality
(start - end)
---109 (73 - 181)
definitionCHROMAT_FILE: MSMg01no073_p18.b1 PHD_FILE: MSMg01no073_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:13 2005CHROMAT_FILE: MSMg01no073_p18.g1 PHD_FILE: MSMg01no073_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTGCGGCGCAAAAGANNCCACTTTCCGACCCGCNGGGANNNNNNNNT
TTGCGNGACCCGAGGAGAAANGGGAANGAGNAAAGNNGNAAAGAAAATAG
GACAGAAAAAAGGGAGGNAAAGNNNNAAAGAAAAAAGGAAAAANAAGGAA
AGAGGAAGAAGANNNGANAGAAAANAAGGAAAANANANNNAAANAGGAGA
GGGAAANGGAAGAAAAAAAAAAAGTTTTTTTTAGGGAAGTAGAAAGAATA
AAGAAAANATAAAGTGAGGAGATGTTGGAGATAGAAACCTTTTTAGTGAG
TTTGGGAANCAGAGANGGAAGNGAGAGGAATTTTTTTTTTTCCCCCCCCC
CCCCCCCTCAGGTGCTGAATACTCCATAGAGAATATCGGCTCAACAAAAA
AAAAAAAAATACTATGCGTGGGGATGCCAATTCATTACATCCAGGAAATC
CTGGACACGATGAGTAGACTAAATTCTTCGGTAAACAGGAGCGTATGAGA
AAGAAGACTTTCACCTCTTAGGACCCGCGTACTTCTTCCACATAATTACC
GAAAAAAACTTCCCAAAACTTTAGAAAGAGATTGTCTTGTACCCATTAGA
TGTCTATTGCACTCCGAAAAAACAGGTTTTTTTTTTTTTTTCCGCCTGAC
ACGGTACAATTTTGTCACCACAAGGACCCGCCTAAGATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCCTGACAGTAAGGGCATATGTCATATTAGGATTATTAGATCCCAAG
CCCCTATTCTCAAAATAAAAAACACTCAGTCTTGGAAACAGTTGAATCTT
TTTTATTTGGTTGGTTTTTGCTTTTTTAGTTTTGTTGTGTAGAACTCTGA
GCTTGTGCCCACAACTAGGCCACCTAGAGTCCTACCTCCACCAACTCATT
AAACCGCCTCCTCCCCACCCTAATACTCCATATACCCACCCCACCCACGA
TATCTCATGTTCAATATGCGCCCAACACGTCCACACCTTTTTTTTTTTCC
CCCCCCCCCCCCCCCTCTTCTTCCCCCTCCTACATCTGCCTCCTCCCCCT
CTCCAAATAAAAAAACAATCTCCCCCCCCGCCGTCCTTTACTATCCCCCC
TTCCCTCCCTCCCCCCCCCCCTCCATACTTCCCCTCCCTCCCATCCTTCC
CCCCTTTCTTCTTCCCCCCCCCTTCCCTTCTTCCTCATTTTCCCTCCCAC
CTCCTCATCCTCATTTACCCTTCCCACTAACCACCCCCTTCTTTCCCTCC
TCCCTTCCCTCACCCCTCCCTCCCCTTCCTCCCCCTCCCATCCCCCTCCC
TTTCCTCCCCTCTCCCCATCCTTTCTTCCCCCCCCTTCCTTCCCCCCACC
TTCCCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_p18.g1 MSMg01no073_p18.g1 CHROMAT_FILE:
MSMg01no073_p18.g1 PHD_FILE: MSMg01no073_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:13 2005
         (109 letters)



>mm_chr16_71664770_71665278
          Length = 509

 Score =  157 bits (81), Expect = 2e-43
 Identities = 102/109 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcatattaggattattagatcccaagcccctattctcaaaataaaaaacactcagtct 60
           ||||||||||||||||||||||||  |||  ||||||||||||||| |||||||||||||
Sbjct: 201 tgtcatattaggattattagatcctgagcttctattctcaaaataacaaacactcagtct 260

                                                            
Query: 61  tggaaacagttgaatcttttttatttggttggtttttgcttttttagtt 109
           ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 261 tggaaacagttgaatcttttttatttggtaggtttttgtttttttagtt 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)