Query= MSMg01no074_d11.b1 MSMg01no074_d11.b1 CHROMAT_FILE:
MSMg01no074_d11.b1 PHD_FILE: MSMg01no074_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:31 2005
(580 letters)
>mm_chr16_69374146_69375125
Length = 980
Score = 934 bits (483), Expect = 0.0
Identities = 568/621 (91%), Gaps = 42/621 (6%)
Strand = Plus / Plus
Query: 1 gttggcttcagcaatagaaatgttttttgtgtctctccatctttgtgccccacacctgct 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 201 gttggcttcagcaatagaaatgttgtttgtgtctctccatctttgtgccccacccctgct 260
Query: 61 ctttagcctgtctgccctgtgttggcatgagacccagaaactcaccatgtagcctaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttagcctgtctgccctgtgttggcatgagacccagaaactcaccatgtagcctaatct 320
Query: 121 gtagtttgttgcaatcatcctattgtaattttctgagcagtagtattataggctttgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagtttgttgcaatcatcctattgtaattttctgagcagtagtattataggctttgaac 380
Query: 181 taatatacctgacttcagaggaactccatgtcatattattgatatgctccatgatagagg 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatacttgacttcagaggaactccatgtcatattattgatatgctccatgatagagg 440
Query: 241 acatattttcccaacatgaactctctttaattgtctagttgccattcttctctttcttct 300
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 acataatttcccaacatgaactctctttaattgtctagttgccattctt-tctttcttct 499
Query: 301 ttccttccatcttccctctttccttctttttcctcttcttcctctcccccttctctgtct 360
||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct: 500 ttccttccatcttccctctttccttctttttcctcttcttcctcttcctcttctccgtct 559
Query: 361 ttcctcacccttccctttcttcttcttcttcttcgtcttcttcttcttcttcttcttctt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 ttcctcacccttccctttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 619
Query: 421 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcctcttcct 480
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 620 cttcttcttcttcttcttcttcttcttcttcttcttcttcctcttcctcttcctcttcct 679
Query: 481 cttcctcttcctct---t-tc--tctccctctcctttcttctttcttctt---------- 524
|||||||| ||||| | || |||||||||||||||||||||||||||
Sbjct: 680 cttcctctccctctccctctccctctccctctcctttcttctttcttctttcttctttct 739
Query: 525 -------------------------cttcttctttcttcttctccttctccttctcctcc 559
|||||||||||||||||||||||||||||||||||
Sbjct: 740 tctttcttctttcttctttcttcttcttcttctttcttcttctccttctccttctcctcc 799
Query: 560 tcctccttctcctcctcctcc 580
|||||||||||||||||||||
Sbjct: 800 tcctccttctcctcctcctcc 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 266
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_d11.g1 MSMg01no074_d11.g1 CHROMAT_FILE:
MSMg01no074_d11.g1 PHD_FILE: MSMg01no074_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:31 2005
(593 letters)
>mm_chr16_69536014_69537007
Length = 994
Score = 992 bits (513), Expect = 0.0
Identities = 574/595 (96%), Gaps = 3/595 (0%)
Strand = Plus / Minus
Query: 1 tctggcaacatgagctctgttaatttcttcaccactccttactattgttattcaaagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tctggcaacatgagctctgttaatttcttcaccactccttactattgttattcaaagtaa 735
Query: 61 atgtagcaatatgtttatgcttttgatttattgtcatttttaaaatagcattaagcatta 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 734 atgtagcaatatgtttatgcttttgatttattgtcattttttaaatagcattaagcatta 675
Query: 121 aagtatctatatagtaaaggttaatataaacgtggtctctatttttaaaatcaaaataag 180
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 674 aagtatctatatagtaaaggttaatataaacgtggtctctatttttaaaattgaaataag 615
Query: 181 acattaccagcagtttaagagaaactagccttataagatttaaacaccacataaatacat 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 614 acattaccagaagtttaagagaaactagccttataagatttaaacaccacattaatatat 555
Query: 241 ttgttacgattaaacgaaatatatctaaaagattacttttttaaagaaataggaattatt 300
|||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 554 ttgttatgattaaatgaaatatatctaaaagattacttttttaaagaaatgggaattatt 495
Query: 301 tactggaaagtttggaagctaatgacccaaacgctgatgagcctagggctctggcatctg 360
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tactagaaagtttggaagataatgacccaaacgctgatgagcctagggctctggcatctg 435
Query: 361 gtgacaacactgttggttatgatatcatgttgacaataatttttacaaaaaaagaataca 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 434 gtgacaacactgttggttatgatatcatgttgacaataatttttac-aaaaaagaataca 376
Query: 421 gatggccatacaggaaatgtaaatctgaggtagaggttagatatgttctctcatgagatc 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gatggccatacaggaaatgcaaatctgaggtagaggttagatatgttctctcatgagatc 316
Query: 481 tcacccccaagaattaatatttactccagaacctggcaccttacatcatcctgggatcgt 540
| |||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
Sbjct: 315 ttacccccaagaattaatatttactctagagcctggcaccttacatcatcccgggatctt 256
Query: 541 ccataaaattcatcagttaatatcttccaaaaa--atatatctattcccggggac 593
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 255 ccataaaattcatcagttaatatcttccaaaaaatatatatctattcctggggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space: 573672
Effective search space used: 573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
