Query= MSMg01no074_m17.b1 MSMg01no074_m17.b1 CHROMAT_FILE:
MSMg01no074_m17.b1 PHD_FILE: MSMg01no074_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:16 2005
(319 letters)
>mm_chr16_89053283_89054000
Length = 718
Score = 472 bits (244), Expect = e-137
Identities = 295/318 (92%), Gaps = 12/318 (3%)
Strand = Plus / Minus
Query: 7 gaattcattttttttcatagctgaatagatttatatctctacttggaatccatgccacaa 66
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaattca-ttttttaaatagctgaatagatttatatctctacttggaatccatgccacaa 356
Query: 67 gagggagtccatctcctacctgtctggatggtcaagaaccagagactggatagtccagag 126
||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 355 gagggagcccatgtcctacctgtctggatggccaagaaccagagactggatagtccagag 296
Query: 127 accagggtaaaaccaaacacaactgattaaaaaaaataaatgaaatgattcctactgata 186
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 295 accagggtaaaaccaaacacaactgatttaaaaaaatgaatgaaatgattcctactgata 236
Query: 187 gttaaaaaggagtctaattttgatgtctccagaaaatcccttgaaagtgggagagggacg 246
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 235 gtttaaaaggagtctaattttgatgtctccagaaaatcccttaaaagtgggagaggaacg 176
Query: 247 attgtaggaatcagaaaagatagagaaca-----ttttttagaacacggccaatctaatc 301
||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 175 attgtaggaatcagaaaagatagagaacacaaag------agaacatggccaatctaatc 122
Query: 302 aactaagcaggatcacat 319
||||||||||||||||||
Sbjct: 121 aactaagcaggatcacat 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space: 219790
Effective search space used: 219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_m17.g1 MSMg01no074_m17.g1 CHROMAT_FILE:
MSMg01no074_m17.g1 PHD_FILE: MSMg01no074_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:16 2005
(530 letters)
>mm_chr16_88931118_88932047
Length = 930
Score = 919 bits (475), Expect = 0.0
Identities = 517/531 (97%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 1 agtattttccacagcttggc-attcactaaggactttggaatgtcttgtcactcacttaa 59
|||||||||||||||||||| | |||||||||||||||||||||||||| | ||||||||
Sbjct: 201 agtattttccacagcttggcga-tcactaaggactttggaatgtcttgttaatcacttaa 259
Query: 60 aagactcatctctgtttatgaattacttcaatgaattgtcactgcaagatgtgggcttct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagactcatctctgtttatgaattacttcaatgaattgtcactgcaagatgtgggcttct 319
Query: 120 gaacaagatcatcttttaaagttttgagacattcttaaatgtttagagaatatcattcag 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 320 gaacaagatcatcttttaaagttttgagatattcttaaatgtttagagaatatcattcag 379
Query: 180 ccatatatgcttttcttcatttacagggtcaaatattatagggagaaatcagctgtatga 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 ccatatatgcttttcttcatttacagggtcaaatattgtagggagaaatcagctgtatga 439
Query: 240 acccttgatggcacagaggacatctgacactaaggcattcagagcagtgagtgacagctt 299
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 440 acccttgatggcgcagaggacatctgacactaagacattcagagcagtgagtgacagctt 499
Query: 300 gctccatcagtgcagaaggatgtggacatatgcaggtacctggcaagtgaagaaaggtgt 359
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 500 gctccatcagtgcagaaggatgtggacatattcaggtacctgggaagtgaagaaaggtgt 559
Query: 360 cttccatatgtatggctgacaggctctcaataattcatggggatgctaaatgcagagggg 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttccatacgtatggctgacaggctctcaataattcatggggatgctaaatgcagagggg 619
Query: 420 gtgctccttcaagctttaaatacaatgaaatatgttattataagtaaccttaaataatat 479
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgctccttcaaactttagatacaatgaaatatgttattataagtaaccttaaataatat 679
Query: 480 gaaggattttattctcataagtattaggaaattggattctacttattattt 530
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 gaaggattttattctcataagtattaggaagttggattctacttattattt 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
