Query= MSMg01no074_n03.b1 MSMg01no074_n03.b1 CHROMAT_FILE:
MSMg01no074_n03.b1 PHD_FILE: MSMg01no074_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:19 2005
(289 letters)
>mm_chr16_33947139_33947823
Length = 685
Score = 485 bits (251), Expect = e-141
Identities = 278/289 (96%), Gaps = 4/289 (1%)
Strand = Plus / Minus
Query: 1 ggtcatacagccaagccgtgacagaaatgaggcccctgatcaatggctatacctctattg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggtcacacagccaagccgtgacagaaatgaggcccctgatcaatggctatacctctattg 426
Query: 61 ggctgtgtcccagaggctcaagcctagcccacctccagggcaggaggcttcaggaacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggctgtgtcccagaggctcaagcctagcccacctccagggcaggaggcttcaggaacaaa 366
Query: 121 ccaggcaggcaggcaggaggtagcatgcaccatttccgaaaggcctggtctgaggtcagg 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 365 c----caggcaggcaggaggtagcatgcaccatttccgaaaggcctggtctgaggtcaag 310
Query: 181 tatttctgagcccttagcaaagagagctaaggagcagatgtgcttatttctaagcaaaga 240
||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct: 309 catttctgagcccttagcaaagagcgctaaggagtaaatgtgcttatttctaagcaaaga 250
Query: 241 cagggcttgaaagcaaggcctcaaagccacaggcaagcgccctgggttg 289
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tagggcttgaaagcaaggcctcaaagccacaggcaagcgccctgggttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 685
Length adjustment: 9
Effective length of query: 280
Effective length of database: 676
Effective search space: 189280
Effective search space used: 189280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no074_n03.g1 MSMg01no074_n03.g1 CHROMAT_FILE:
MSMg01no074_n03.g1 PHD_FILE: MSMg01no074_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:19 2005
(239 letters)
>mm_chr16_33801220_33801858
Length = 639
Score = 443 bits (229), Expect = e-129
Identities = 238/241 (98%), Gaps = 2/241 (0%)
Strand = Plus / Plus
Query: 1 tttt-att-aaaaaaaatccaataaaacgaaaacacagcaggcccacggttgtgtcagta 58
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 199 ttttaattaaaaaaaaatccaataaaaggaaaacacagcaggcccacggttgtgtcagta 258
Query: 59 aagcttaatcaggacaaaagggtaagcagttaaagcccgtgtccttttcccctaaactcc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aagcttaatcaggacaaaagggtaagcagttaaagcccgtgtccttttcccctaaactcc 318
Query: 119 atggcccttggagaactctagaagcaacctctactgccagttcctgtgtcccccttcaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atggcccttggagaactctagaagcaacctctactgccagttcctgtgtcccccttcaga 378
Query: 179 gacaacctaagcaaatgcaataagtacaactgctctcttgtcacagaggagcatgtcacg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gacaacctaagcaaatgcaataagtacaactgctctcttgtcacagaggagcatgtcacg 438
Query: 239 c 239
|
Sbjct: 439 c 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
