BAC Information

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BAC

Clone NameMSMg01-075B13
Chromosome16 (Build37)
Map Location 36,510,057 - 36,638,654
singlet/doubletdoublet
Overlap geneCasr, EG667232, Cd86
Upstream geneSema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3
Downstream geneIldr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075B13.T7 (MSMg01no075_b13.b1)MSMg01-075B13.TJ (MSMg01no075_b13.g1)
ACCAG297995AG297996
length676743
length of high quality
(start - end)
267 (42 - 308)172 (75 - 246)
definitionCHROMAT_FILE: MSMg01no075_b13.b1 PHD_FILE: MSMg01no075_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:40 2005CHROMAT_FILE: MSMg01no075_b13.g1 PHD_FILE: MSMg01no075_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,510,057 - 36,510,320)(36,638,485 - 36,638,654)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCGGATGCCCGGAATCTGCCCAGCCTTCAGACCGAACCCAATGGTGCCC
CCGACTACATGGAAGTACTCAGGCATAGCAATCAGGGAGGAACTGGCCCA
GGCCTCGCTGGCCAGCCAGATCCTGCCTGTGATGTTACGGCGCACAATCT
CCTTGATGAGAGGTTCTAGGTCTGGGCCGCTGGAGAAAACGACAATGACC
TTGGCTGTAGAGTTCTGGATCACTTCCACCACCTGCTGGATCTCTTCCTC
ATCAGAGTACTGTTAGATGAGCTCGCTGAAGTCAATGCAGATGTCCCTCT
CCTCGGCTTCCTCTCGGAACTTCTCAATGCCAGGCCTGCCATAGTCGTCG
TCGTTTGCCACCCCCCCCATTCAGTTCCAACGGAAATACTCGATAATGTC
AGCCATCGCGGTGGTCTGTTGTTCGTCGTTGTTAATGGCGCGGAGGAAGG
ACTTAAACTGGTTCTTATTGCTGACAAGCCTGCCCAGAGAAAGCGTACCT
CATCTGTGAAGAATCATGAACTTTAAATGAGTGACCGAGTGTGCGTTGCT
TGTCCATTCTTCTGTATTAATGGAATGTCCCTTATCACATGTGTCCAATG
GTGCCATGTATGCATGTGTTAGAATA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAACAGTGCGGTGGCTCAGCCTAA
AACCCTCATGGGCAAAAGTCTCAGAATGAGTGGCCAGAGCCAACACAACG
TAGGGAGGGTTTCATCTGCCCAGACAGAAACTGTCTCCAGCAGCCACTCA
GTTGTCTGGCTCTGAAACCAGTCACTGTCCTGGCCCAGTTCTAACACTGC
CATTGTCTTTATTGGCGAGTGTCCTTTGCATGACTGCAGGCTGTATCTTT
TCCTTCCCCCCCCTTTTTTTTTTTTTTATTTTCTTTCTTCTCTTTCTCCC
TTTTTTTTTTTTTTTTTCCCTCCCCGTATTTTTTTTTTTTTTTTTTTATT
TTTTCTTTTTTTTTTTGTTTCTTGCCTTCTTTCCCTTTTTTTCTTTTTTT
GTCACTGCCCATTCTTGAGTTTGAGTCTCTCTTCTTTTATCTCCCTTTCC
TTCTTTCCCATCTTTCTCCCACTCTCCTTTCTCTCCTACGCCCACTTTTT
CCTTTTTTTCTCCCTTCTAACTTCTTTTTTTTATCTTTCTCTCTTTACCT
CTTTTTCCTCTTCTTCTCTCTTTCCTCCCCCTCCACTCCCCACCTCCCCT
CTTCTCTCACTCCCACCTCTCCCCCTCTTCTTCCCCTCTTTTCTTTTTCT
TCTTATTACCCTCAATTCTTACTCACTTCTCTTACTTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_b13.b1 MSMg01no075_b13.b1 CHROMAT_FILE:
MSMg01no075_b13.b1 PHD_FILE: MSMg01no075_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:40 2005
         (267 letters)



>mm_chr16_36509854_36510520
          Length = 667

 Score =  487 bits (252), Expect = e-142
 Identities = 261/264 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcggatgcccggaatctgcccagccttcagaccgaacccaatggtgcccccga 63
           |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 ggaattctcggaagcctggaatctgcccagccttcagaccgaacccaatggtacccccga 263

                                                                       
Query: 64  ctacatggaagtactcaggcatagcaatcagggaggaactggcccaggcctcgctggcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctacatggaagtactcaggcatagcaatcagggaggaactggcccaggcctcgctggcca 323

                                                                       
Query: 124 gccagatcctgcctgtgatgttacggcgcacaatctccttgatgagaggttctaggtctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccagatcctgcctgtgatgttacggcgcacaatctccttgatgagaggttctaggtctg 383

                                                                       
Query: 184 ggccgctggagaaaacgacaatgaccttggctgtagagttctggatcacttccaccacct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggccgctggagaaaacgacaatgaccttggctgtagagttctggatcacttccaccacct 443

                                   
Query: 244 gctggatctcttcctcatcagagt 267
           ||||||||||||||||||||||||
Sbjct: 444 gctggatctcttcctcatcagagt 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no075_b13.g1 MSMg01no075_b13.g1 CHROMAT_FILE:
MSMg01no075_b13.g1 PHD_FILE: MSMg01no075_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:40 2005
         (172 letters)



>mm_chr16_36638285_36638856
          Length = 572

 Score =  313 bits (162), Expect = 3e-90
 Identities = 168/170 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaacagtgcggtggctcagcctaaaaccctcatgggcaaaagtctcagaatgagtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttgaacagtgcggtggctcagcctaaaaccctcatgggcaaaagtctcagaatgagtggc 311

                                                                       
Query: 61  cagagccaacacaacgtagggagggtttcatctgcccagacagaaactgtctccagcagc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cagagccaacactacgtagggagggtttcatctgcccagacagaaactgtctccagcagc 251

                                                             
Query: 121 cactcagttgtctggctctgaaaccagtcactgtcctggcccagttctaa 170
           ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 250 cactcagttgtctggctctgaaaccagccactgtcctggcccagttctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)