Query= MSMg01no075_h02.b1 MSMg01no075_h02.b1 CHROMAT_FILE:
MSMg01no075_h02.b1 PHD_FILE: MSMg01no075_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:06 2005
(410 letters)
>mm_chr16_13847497_13848305
Length = 809
Score = 733 bits (379), Expect = 0.0
Identities = 400/407 (98%), Gaps = 1/407 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactctgtataccaggctagtatcccagctcacagcctgcctctgtctccctag 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagatcaggctagtatcccagctcacagcctgcctctgtctccctag 263
Query: 64 tgctaggattaaagggctatacctccacacctggcataaaaaattttttaatcacctacc 123
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 tgctaggattaaaggcctatacctccacacctggcataaaaaaatttttaatcacctacc 323
Query: 124 tgaggctggtaattcctaggaaaaacctgaacaccactactggagaactgagctcatctt 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaggctggtaattcct-ggaaaaacctgaacaccactactggagaactgagctcatctt 382
Query: 184 ccacctgcaaaaagagaactgtgctgttacaacactgaagatagggctaaacatcagcgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccacctgcaaaaagagaactgtgctgttacaacactgaagatagggctaaacatcagcgg 442
Query: 244 gataagacagtatctttggaaagaaaataggcagaaatgctgcttatacacaaacattaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gataagacagtatctttggaaagaaaataggcagaaatgctgcttatacacaaacattaa 502
Query: 304 aaggctcaaagggtgtaactggcctgacgtgaccaatgaaaatgatggtccctccctctc 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 503 aaggctcaaagggtgtaactggcctgaggtgaccaatgaaaatgatggtccctccctctc 562
Query: 364 ttgacccaacagactctatgaagacatgcataaacgagcaacttaaa 410
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 563 ttgacccaacagactctatgaagtcatgcataaacgagcaacttaaa 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 809
Length adjustment: 9
Effective length of query: 401
Effective length of database: 800
Effective search space: 320800
Effective search space used: 320800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_h02.g1 MSMg01no075_h02.g1 CHROMAT_FILE:
MSMg01no075_h02.g1 PHD_FILE: MSMg01no075_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:06 2005
(539 letters)
>mm_chr16_13938122_13939058
Length = 937
Score = 984 bits (509), Expect = 0.0
Identities = 531/539 (98%), Gaps = 2/539 (0%)
Strand = Plus / Minus
Query: 1 atatagaagaaaaacataagatgataactggctatttggtctatttgtggtgtccttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 atatagaagaaaaacataagatgataactggctatttggtctatttgtggtgtccttgct 790
Query: 61 tgtatttctaagtgggagtggaggcataacagtcaagggttcaagattatttccaactat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tgtatttctaagtgggagtggaggcataacagtcaagggttcaagattatttccaactat 730
Query: 121 acagtgagtctgagacaagcctggactctatagactctgattttataaaccaaaatgagg 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 729 acagtgagtctgagacaagcttggactctatagactctgattttataaaccaaaatgagg 670
Query: 181 ggcagcaaggacagctctggggtaaatgctcatgacttcaatctccagaacccatgtggt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggcagcaaggacagctctggggtaaatgctcatgacttcaatctccagaacccatgtggc 610
Query: 241 agactgccacaaagtgttctatgaccttcccaaatgccatgtgcacttatatataaatat 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agactgctacaaagtgttctatgaccttcccaaatgccatgtgcacttatatataaatat 550
Query: 301 gcacacagaaagaaagacacaaacacagagaggcagggagtttaaaaaaaaaggaagaag 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 549 gcacacagaaagaaagacacaaacacagagaggcagggagt--aaaaaaaaaggaagaag 492
Query: 361 gcagtcaaggagagggaaactgaaaggtaagggagaagaaggtggcaatctgtaggccaa 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 491 gcagtcaaggagaaggaaactgaaaggtaagggagaagaaggtggcaatctgtagaccaa 432
Query: 421 agaaagaggagtcagaataaaaccgatccgaccttcctgaactgttttgttttgggtttt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 431 agaaagaggagtcagaataaaacccatccgaccttcctgaactgttttgttttgggtttt 372
Query: 481 ggtttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactctgtaa 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggtttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactctgtaa 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 937
Length adjustment: 10
Effective length of query: 529
Effective length of database: 927
Effective search space: 490383
Effective search space used: 490383
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
