BAC Information

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BAC

Clone NameMSMg01-076C16
Chromosome16 (Build37)
Map Location 43,963,340 - 43,963,879
singlet/doubletsinglet
Overlap gene2610015P09Rik
Upstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1
Downstream geneZdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076C16.T7 (MSMg01no076_c16.b1)MSMg01-076C16.TJ (MSMg01no076_c16.g1)
ACCAG298808AG298809
length722760
length of high quality
(start - end)		542 (43 - 584)279 (73 - 351)
definitionCHROMAT_FILE: MSMg01no076_c16.b1 PHD_FILE: MSMg01no076_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:03 2005CHROMAT_FILE: MSMg01no076_c16.g1 PHD_FILE: MSMg01no076_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCATTGATTTCCCCTCTCCCTTTCCCCTTAAAGGAAGATTCTCATGCT
CACCCTGGAGATGTGGAAGGCATTTGTAAAACTTACCAAAGAAGAAAGAG
TGAAGGAAGAACGCCGAGACCACCTCCGCCGGAAGGTCTCCGAAATCCTT
CCAGACTTCCAGATGCTGGTGCCTCCGTGATGGCTGCATCCAGTAGCTAC
CCGCTTGCCCGCCGAGGGAAGTCTCTGGTGCCTGGACGTGTGCAGGCTAT
CTCCACCCACACACCAGCTGAGCCTGGCCTACTTTCTGGATGTGTCATAG
CCCTGGGAAGTATCTTGGGATTTGTTCTTCCATCTTGATATCTCCTGGAT
TGCTAGGCATCTGTTGCAATGTCTGTCACAGTGGGTCATCCAAAGGAGCA
GTCTAGGGCACCACTGTTGAGTGTATTTTATATATTCTTAGTATAATAAA
CTTGGGAAGGATGAATGTGCCTGCCTGGACTTACGGAGGGGGCGTCCTTA
TTGCTTGCTGTGAGCTGCAGTACGGGTAACACTGGAGACAAACAGAAAGC
AATGAGGACAGAGAGGGCATGGGTGGCCAGTGTTCTGTGATCAGAACACG
AGTAACAGGTGCCCACCAGGGCCCCCCGCTCTCATTGGCAGAGCATGACT
TACGGTGCTCTGCCCAGCTCAG

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGAATTTGGGTTTCTTAAAAAAAAACA
CAGAAATAATACAAGACTGTGCTTTGATTTCAGTCCCAGGTGCAGGGATG
TGGGGCCGCTTCAGACTGTCTGCAGCAGCTGGGATTTGCCTCGAGTTCTA
GCAGATAATTTCTGCAGTTGTGTGATGTTTGGAATTCTGAGAATTTTTCA
GAGGATACATAAATGTGAGGGTTCCCTGAGATGCAGGGTTGGTGGTTGGT
GGCCACTTGGGGAGGTTGTTTACTGTTTATTAGTAGCTGGGATCAAAGAA
GAATCAAAAAGAAAGAAATTAGATTCAAGAACCTTCCTAATTTCTCTCTC
TCCTCTGTCCTTGTTCCCCCCCACCTATTGCCTTTTACCTTCTCTTTGTC
TTCCTTTCCTTTCTTCTCTTCCCCCTCTTCTCTTTCTTTTCTTTTCTTTT
TCTTTTTCTTCCTTCTTTTCCCCTTTTTCTCATTCGCCCCCTCCTCTTTA
CCTCATTCTATTTCCCTCTTTTATTTCCTCTCCCTCTTTCCCTTTCCCAT
CTCTTTTACTTTTCTTCTTCCCTTTTCCCTCTTTCTCTTCTCTTATCTTT
TCCTTTTCTTCTTCTTCTTCTTTTACTTCTTCTTTCTTCCCTCTTTCTCT
TCCTCCTTCGTCCTCCTCCTTTTTCCCTCCCTCTTTTCTCCTTTCTTTTC
TTCTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_c16.b1 MSMg01no076_c16.b1 CHROMAT_FILE:
MSMg01no076_c16.b1 PHD_FILE: MSMg01no076_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:03 2005
         (542 letters)



>mm_chr16_43963138_43964079
          Length = 942

 Score = 1029 bits (532), Expect = 0.0
 Identities = 538/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattcccattgatttcccctctccctttccccttaaaggaagattctcatgctcacc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattcccattgatttcccctctccctttccccttaaaggaagattctcatgctcacc 262

                                                                       
Query: 63  ctggagatgtggaaggcatttgtaaaacttaccaaagaagaaagagtgaaggaagaacgc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctggagatgtggaaggcatttgtaaaacttaccaaagaagaaagagtgaaggaagaacgc 322

                                                                       
Query: 123 cgagaccacctccgccggaaggtctccgaaatccttccagacttccagatgctggtgcct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cgagaccacctccgccggaaggtctccgaaatccttccagacttccagatgctggtgcct 382

                                                                       
Query: 183 ccgtgatggctgcatccagtagctacccgcttgcccgccgagggaagtctctggtgcctg 242
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ccgtgatggctgcatccagtagctacccgcttgcccgctgagggaagtctctggtgcctg 442

                                                                       
Query: 243 gacgtgtgcaggctatctccacccacacaccagctgagcctggcctactttctggatgtg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gacgtgtgcaggctatctccacccacacaccagctgagcctggcctactttctggatgtg 502

                                                                       
Query: 303 tcatagccctgggaagtatcttgggatttgttcttccatcttgatatctcctggattgct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcatagccctgggaagtatcttgggatttgttcttccatcttgatatctcctggattgct 562

                                                                       
Query: 363 aggcatctgttgcaatgtctgtcacagtgggtcatccaaaggagcagtctagggcaccac 422
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggcatctgttgtaatgtctgtcacagtgggtcatccaaaggagcagtctagggcaccac 622

                                                                       
Query: 423 tgttgagtgtattttatatattcttagtataataaacttgggaaggatgaatgtgcctgc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgttgagtgtattttatatattcttagtataataaacttgggaaggatgaatgtgcctgc 682

                                                                       
Query: 483 ctggacttacggagggggcgtccttattgcttgctgtgagctgcagtacgggtaacactg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctggacttacggagggggcgtccttattgcttgctgtgagctgcagtacgggtaacactg 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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