BAC Information

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BAC

Clone NameMSMg01-076L12
Chromosome16 (Build37)
Map Location 30,175,378 - 30,175,542
singlet/doubletsinglet
Overlap genenone
Upstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263
Downstream gene1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076L12.T7 (MSMg01no076_l12.b1)MSMg01-076L12.TJ (MSMg01no076_l12.g1)
ACCAG299228AG299229
length767695
length of high quality
(start - end)
---165 (214 - 378)
definitionCHROMAT_FILE: MSMg01no076_l12.b1 PHD_FILE: MSMg01no076_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:48 2005CHROMAT_FILE: MSMg01no076_l12.g1 PHD_FILE: MSMg01no076_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATATTTGCGGCTGTATACGTTCCTTTCCAAGAGTGGCGTGGTTTNNC
CTTTCCCTGTATGGGGTTCCANCNGGTGNGTTGCGGNAGGTACTCGGCCC
TTGTCTCTGTTTGTATACTATCTCCCGCCCTTTCTTCTCCGAGTGCCTGC
CGTGGCACGTGTGTGTCACTGTCTTCCTTCNTTCCCTGTGCTCTCCGTTG
CGTGCTCCGCGCCTCTTGCGCCTTCTATCTTTTCTGTCCGTCTGCGCCTG
TCCTGTTCTGCGCTTTTCCCCCCGCCCTGTGTGTTTGTTTGTCGTCCGTT
TCTTCCCTCTTTTTCCCCCTCTCCTTTCCCTTCCCTTTCTCCTCCTTAGT
GTTCATTCATCCGGCCCGCTATTCTCTGCGCTCTTTCTTCGCCACTCCTT
TTTATTCTCTTCCGTGGGCTCCCCCCCCCTCTTTCTTTCTTCTTTTCTTC
CCCGCGTCCGCCCCTCTCTGTTTTTTTTTTCCCGCCTCTTCTTCCCCCCC
TTTTTCTTTCGCTTCTCCTCCCCCTCCCATTGCGCCTCCGCCCCTTCCTC
TGCTCTTTTGTCCCGCCCCCCGCCGTTGGCGTTCTTTGCGCTTTCCGGCC
CACTTCGTTTTACTCTTTCTTTCCCCTCCCTCTCGCGGCGCCGTTCCGCC
CCGTCTGTACGCCTCCCTTTCCTCCCTCCTCCCTAGTTCCGTGTCTCCGT
CATNATGTGCCCCCCGCCTTCTCCGGTGTGTTGGCCCTTCTCCTTCGTTT
TGTCGCCTCGTCCCCTC
AACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCTTCCTGCACGCGACCATTTGC
TTGCTCACCATGGCAGCCTCAGACCCAGCACAGGAGCCATCAAATAGCTT
GTGTTGTCTGTGGCACCCATGGACAGGATCGTGATCGAGCTAGCTAGCAG
GTTCCTTCCCTGATGACCTGACCCTCCAGCATCATCACCTTCACCTCTCT
GACTTCTTAACTGGTAATTCTGAACACCTTGTGGCTCTGTGTACTTCCTG
GGCTCTTGCTATCCCTCCAGAGACCCCCACTTCTGTCTTCGTAGCTGGTT
CCTCTGCTCCCTGTTCTATATCTGTTCTATATAGAACATGCTCTTTTGTT
TGTTGCTTTCCACCACAGGGCTTCTTTCCTGAACCTCACTCTGTACACCG
GTCTGGCCTCGAACTCATAATTCCCCCTGCCCCTGCCTTCTCCGTTTTTA
GGTGTGAGTGCCTTTTCCATTGCCACCTGGCTCCATATAGATCATTTTCA
CAGAGTCTATATCTCACGGCCCTTTTCCTGCCTGTTCCCATACTGTTAGC
TGTCGCTTTCATCTGTTTCCTGCCGCCCATCCTACTTTTATTCCCCATCC
GGTCTTTTTACCCTCTGCCTCTCCATTCCGCCCTTCCTCACTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_l12.g1 MSMg01no076_l12.g1 CHROMAT_FILE:
MSMg01no076_l12.g1 PHD_FILE: MSMg01no076_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:48 2005
         (165 letters)



>mm_chr16_30175178_30175742
          Length = 565

 Score =  296 bits (153), Expect = 5e-85
 Identities = 162/165 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacctgaccctccagcatcatcaccttcacctctctgacttcttaactggtaattctga 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 365 tgacctgaccctccagcatcaccaccttcacctctctgacttcttaactggcaattctga 306

                                                                       
Query: 61  acaccttgtggctctgtgtacttcctgggctcttgctatccctccagagacccccacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acaccttgtggctctgtgtacttcctgggctcttgctatccctccagagacccccacttc 246

                                                        
Query: 121 tgtcttcgtagctggttcctctgctccctgttctatatctgttct 165
           ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 245 tgtcttcgtagctggctcctctgctccctgttctatatctgttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)