BAC Information

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BAC

Clone NameMSMg01-076N22
Chromosome16 (Build37)
Map Location 83,620,261 - 83,620,747
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572
Downstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076N22.T7 (MSMg01no076_n22.b1)MSMg01-076N22.TJ (MSMg01no076_n22.g1)
ACCAG299344AG299345
length717715
length of high quality
(start - end)
490 (42 - 531)424 (71 - 494)
definitionCHROMAT_FILE: MSMg01no076_n22.b1 PHD_FILE: MSMg01no076_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:00 2005CHROMAT_FILE: MSMg01no076_n22.g1 PHD_FILE: MSMg01no076_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATT
CAGTGAAAGTCCCGAGAAGCCAGAATGAAACCCTCAGCGTGAAGAGTTTT
GAGCCAGAACAGCTGAGTTGAAGCAACAAGCCAGAGTTCAGAAAAAAATA
GAAAGAGTGAGCTTATTCAGCAGTAATGTGCAGAGGCTGAGATGTTATGG
GCTTCAGTCAGCAGGTGTAGGTGGGAAGCTGAAGCCTTCAAGGTCCTTAG
TTGCAGAATTTTAAATTGCAGGATGACTAGAAGCTGCCAGCCCTAGACCT
AAGAATAGGGAAATACAAATGCTCTGGGTTGATCGCATCTCCTCCCTTTT
TCTGAGCAAATAAAACTGACCTTTACATTTACAATATTTAAATGATTCAA
AGTTGACCCTCCACTTTGCCAGAAAATGCCCTAGAATGTTAGAATTTAGT
AAGCACAATTTCATTCTACACACTGAATACCAATAACTACTTGAATAAAT
GTTCAAAAAAGCCAATAACTTTATGTAAATTAAAAATGAGAAAACGTAAT
TGCATTTCCATAGTCCCAGTACAATTATACGTAAACTAGCAGCCAATGAA
TTCTATCATAAAATATCAAACTACTGTATGAACGTCATGGACAATGCTAT
GTCATCAGTAATTTTCCTTATCTGAGATATTCCACAATGACTTGCATACG
TTTATTTGGCCATATAG
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATA
GGGTTATTTGGTTCTCTAGAATCTAACTTCATGTGTTCTTTGTATATATT
GGATATTAGCTCTCTATCAGATGTAGGATTGGTAAAGATCTTTTTCTCAT
GGAAGGAGTTACAGAGACAAATTGTGAAGCAGAGACTGAAGGAATGACCA
TCCAGAGACTGTCCCACCTGGGGATCTATCCCATATACAACCTTCAAACC
CAGACACTATTTTGGATGCCAGGAAGTGACTGCTGACAGGAGCCTGATAC
AGCTGTCTCCTGAGAGGCTTTTCCAGTGCCTGACAAATACAGAAGTGAAT
GCTCACAGCCATCCATTGGACTGAGCAGAGTCCTCAATGAAGGAGCTAGA
GAAAGGATCCAAGGAGCTAAAGGTGTTTGCAGCCCCATAGGAAGAACAAC
CATATGAACTAACCAGCATCTCCAGAGCTCCCAGGGACTAAACCACCAAA
CAAATAATTCACATTGTGAGACTGTTGGCTCTAGCTGCATATGCAGCAGA
GGATGACCCAGTTGGTCATCAGCGGGAGGAAAGGCCCTTGGGCCTGTTAA
GGTTCTATGCCCCAGTATAGGGAAATGTCAGCGCCAATAAGCAGGAGTGC
CTGTTCTGGAAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_n22.b1 MSMg01no076_n22.b1 CHROMAT_FILE:
MSMg01no076_n22.b1 PHD_FILE: MSMg01no076_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:00 2005
         (490 letters)



>mm_chr16_83620058_83620947
          Length = 890

 Score =  876 bits (453), Expect = 0.0
 Identities = 479/489 (97%), Gaps = 4/489 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtgaaagtccc--gagaagccagaatgaaaccctcagcgtgaagagttttga 61
           |||||||||||||||  ||  ||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtgaaag--ccgagagaagccagattgaaaccctcagcgtgaagagttttga 261

                                                                       
Query: 62  gccagaacagctgagttgaagcaacaagccagagttcagaaaaaaatagaaagagtgagc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gccagaacagctgagttgaagcaacaagccagagttcagaaaaaaatagaaagagtgagc 321

                                                                       
Query: 122 ttattcagcagtaatgtgcagaggctgagatgttatgggcttcagtcagcaggtgtaggt 181
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 322 ttattcagcagtaatgtgcagaggctgagatgttatgggcttcggtcagcaggtgtaggt 381

                                                                       
Query: 182 gggaagctgaagccttcaaggtccttagttgcagaattttaaattgcaggatgactagaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggaagctgaagccttcaaggtccttagttgcagaattttaaattgcaggatgactagaa 441

                                                                       
Query: 242 gctgccagccctagacctaagaatagggaaatacaaatgctctgggttgatcgcatctcc 301
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctgccagccctagacctaaggatagggaaatacaaatgctctgggttgatcgcatctcc 501

                                                                       
Query: 302 tccctttttctgagcaaataaaactgacctttacatttacaatatttaaatgattcaaag 361
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcccttcttctgagcaaataaaactgacctttacatttacaatatttaaatgattcaaag 561

                                                                       
Query: 362 ttgaccctccactttgccagaaaatgccctagaatgttagaatttagtaagcacaatttc 421
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 562 ttgaccctccactttgtcagaaaatgccctagaatgttagaatttagtaagtacaatttc 621

                                                                       
Query: 422 attctacacactgaataccaataactacttgaataaatgttcaaaaaagccaataacttt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attctacacactgaataccaataactacttgaataaatgttcaaaaaagccaataacttt 681

                    
Query: 482 atgtaaatt 490
           |||||||||
Sbjct: 682 atgtaaatt 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)