BAC Information

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BAC

Clone NameMSMg01-078A01
Chromosome16 (Build37)
Map Location 9,539,003 - 9,539,265
singlet/doubletsinglet
Overlap genenone
Upstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078A01.T7 (MSMg01no078_a01.b1)MSMg01-078A01.TJ (MSMg01no078_a01.g1)
ACCAG299441AG299442
length701708
length of high quality
(start - end)
232 (45 - 276)263 (79 - 341)
definitionCHROMAT_FILE: MSMg01no078_a01.b1 PHD_FILE: MSMg01no078_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:11 2005CHROMAT_FILE: MSMg01no078_a01.g1 PHD_FILE: MSMg01no078_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATATGAACCACTTTAGTGTTTCTATATAGCTCCTAATTATGGCC
CTCTCCCCTTATCTGTCTGTCTCCCTCTGTTCTTCCCTCTCCCCCTGTCT
CTCCCTTCCTCCTCTGTCTCTCTGTCTCCATCTTTCTCTGTACATGTCTG
TCTGACATTGTCTCTCTCTCCACATCTCACAATGCTAGGCAGTAAATATA
GTTCATTTTAAAGATGGGAAAAGTGAATAGTATAGATGTTAATTAATTGA
ACATCATCACTCAACCACTTCATAGATTGTGAAAGTTGTAGGTAATTTAT
GCCAAATACCTAGTATAGACCATGGGACTTATCAAATGGTGCCTCTGTGC
ATTTACAGTGCAATCTATATTTTTTTAAATGGCACTCACTTCAGTTATTT
TCTTTTGCTTTTTGCATTTTGAGTGAATTTCTGAGAACAACCAACAGCGT
TCTTCTTTCTCACATGCGCTGGTTGTATACTCTAAAGACAAATATCCCCA
GTGATCATTGTCCATTGGCACAGCCCACACAATAGGTTGACTACTGACAT
GCACACAATTGTTGTCCAGAAAGCTCTGCCCTCTCCTGGTCCACATTGTT
AAATTAAACATTGGTTTACTGCTCTGAAAAATGCTAGCAATTTAAGTGAC
T
CTTTCCATTGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGAGGATGTCAGTTACAA
CCAAATACATGGACCCATATTATCAGGCTTCTTTACTTCTCAACCCTGAA
GTCATCCTACCTCTGACATTCATAATTAAGCTGTAGGAATGATGTGTCTG
TATGGAAAGGAACTGACAGAAGTCCCTAGAAATCACAGTGACGTGCCTGC
GTAGGTGGCTCAACAAGTAAAGCATTTGTCACTTAAATGTGAGACATTAA
GTCCAGATCCCCAGGAGCTGGTTAAAGTTGAATGCAGTGTCAACAACAAC
AACAACAAACAATAGTGTCTATAATTATAGCTCTCCTGTACTAAGAAGGG
AGATGGATCCAGTAGAATCCCAGGAGCCTCACAAGCCAGCTAGCCTGGTT
TGCAGCAGTGATCAGCATGATGCCCAGCTTCAGACAAGGTGTACAGCAAA
CACTGAAATCTGAGGTTGCTCCTGACATCCATATACATATGTGACACACA
CACGGAACATGGTGGTATACAAACACACACCATATCACACCATACCACAC
CAAACCACTTCATACCATACCCCACCCCTTCTACCTATATATATTATTTC
TGCTTGCTTATACGATTTCATGCCCTTTAAAGATGTAATACTGACTAGGC
TGCATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_a01.g1 MSMg01no078_a01.g1 CHROMAT_FILE:
MSMg01no078_a01.g1 PHD_FILE: MSMg01no078_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:11 2005
         (263 letters)



>mm_chr16_9538803_9539465
          Length = 663

 Score =  501 bits (259), Expect = e-146
 Identities = 262/263 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctgaggatgtcagttacaaccaaatacatggacccatattatcaggcttctttactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctgaggatgtcagttacaaccaaatacatggacccatattatcaggcttctttactt 260

                                                                       
Query: 61  ctcaaccctgaagtcatcctacctctgacattcataattaagctgtaggaatgatgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaaccctgaagtcatcctacctctgacattcataattaagctgtaggaatgatgtgtc 320

                                                                       
Query: 121 tgtatggaaaggaactgacagaagtccctagaaatcacagtgacgtgcctgcgtaggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatggaaaggaactgacagaagtccctagaaatcacagtgacgtgcctgcgtaggtgg 380

                                                                       
Query: 181 ctcaacaagtaaagcatttgtcacttaaatgtgagacattaagtccagatccccaggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaacaagtaaagcatttgtcacttaaatgtgagacattaagtccagatccccaggagc 440

                                  
Query: 241 tggttaaagttgaatgcagtgtc 263
           ||| |||||||||||||||||||
Sbjct: 441 tgggtaaagttgaatgcagtgtc 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)