Query= MSMg01no079_c17.b1 MSMg01no079_c17.b1 CHROMAT_FILE:
MSMg01no079_c17.b1 PHD_FILE: MSMg01no079_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:43 2005
(574 letters)
>mm_chr16_85875033_85876005
Length = 973
Score = 1004 bits (519), Expect = 0.0
Identities = 556/571 (97%), Gaps = 8/571 (1%)
Strand = Plus / Minus
Query: 5 gaattctttgtaccatatacatatatatatatatatgtgtatatatatatatatatgttc 64
|||||||||| | || ||| ||||||||||||||| ||||||||||||||||| |||
Sbjct: 825 gaattctttgga-caaatatatatatatatatata----tatatatatatatatatattc 771
Query: 65 ttatataatcaaatatagatatttcaatgtcttgatttctgttaggtggtctttcatttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttatataatcaaatatagatatttcaatgtcttgatttctgttaggtggtctttcatttt 711
Query: 125 aactaagaaagaaaaattgtatgttttcaatcacttctaatgatgaaagtaacttcggca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aactaagaaagaaaaattgtatgttttcaatcacttctaatgatgaaagtaacttcggca 651
Query: 185 taaggaaaggtggtgtacagcaggagccaagccatggatccttttgagagatcacaccga 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 taaggaaagatggtgtacagcaggagccaagccatggatccttttgagagatcacaccga 591
Query: 245 gatattttattccagtagtgggactctagctttgctatttaaatgagagttcaaaaaaat 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 590 gatattttattccagtagtgggagtctagctttgctatttaaatgagagttcaaaaaaat 531
Query: 305 taatggcctggtaattttgatttaaaaatactgacaagacagtttagtgtcactgtggta 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 530 taatggcctggtaattttgatttaaaaataccgacaagacagtttagtgtcactgtggta 471
Query: 365 gcaggaactggcaagccccgcccctcttttatgattggagtgctaacatttgaactacaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gcaggaactggcaagccccgcccctcttttatgattggagtgctaacatttgaactacaa 411
Query: 425 ccatagagaatcaaggagaaaccccaaggctaaactgatataaaaacaagcacacaggcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccatagagaatcaaggagaaaccccaaggctaaactgatataaaaacaagcacacaggcc 351
Query: 485 cacatttgttcaaaactaacagatttcatcacaccatagtttacccccccc-tttttttt 543
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 350 cacatttgttcaaaactaacagatttcatcacaccatagtttaccccccccctttttttt 291
Query: 544 tacttttttttttataggaagccaatgacat 574
||||||||||| ||||||||||||||||||
Sbjct: 290 tactttttttt--ataggaagccaatgacat 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space: 543132
Effective search space used: 543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_c17.g1 MSMg01no079_c17.g1 CHROMAT_FILE:
MSMg01no079_c17.g1 PHD_FILE: MSMg01no079_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:43 2005
(595 letters)
>mm_chr16_85776934_85777928
Length = 995
Score = 1019 bits (527), Expect = 0.0
Identities = 570/589 (96%), Gaps = 8/589 (1%)
Strand = Plus / Plus
Query: 1 tctttatagggtaaccatgactaccaagtgtctccagaacatctcatccttctactcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctttatagggtaaccatgactaccaagtgtctccagaacatctcatccttctactcaga 268
Query: 61 aagtctgtagccaataaataacaccatcatgtccccaacctttggtaactaatattttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aagtctgtagccaataaataacaccatcatgtccccaacctttggtaactaatattttgc 328
Query: 121 ttcccaacactatgaactgcactgttatatgcatcttgtgtctcttgacgtcatttaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcccaacactatgaactgcactgttatatgcatcttgtgtctcttgacgtcatttaact 388
Query: 181 cggcataccgctattgaagttcatttgggttgtagcatagagaaaaatgctctcattttc 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cagcataccgctattgaagttcatttgggttgtagcatagagaaaaatgctctcattttc 448
Query: 241 tgctcagtaatgttccatttcatccaatgccacacttttggttttgccatccatacactg 300
||||||||||||||||||||||| || |||||||||||| ||||| ||||||||||| ||
Sbjct: 449 tgctcagtaatgttccatttcattcagtgccacactttttgttttcccatccatacagtg 508
Query: 301 atggccatctaaacggctttcatgctttttggatgttgtgaatgagccactgcacactga 360
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atggccatctagatggcattcatgctttttggatgttgtgaatgagccactgcacactga 568
Query: 361 tgattaatatttatttgaaacgctgctatctgctctttccagagcccataaataaataaa 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgattaatatttatttgaaactctgctatctgctctttccagagcccataaataaataaa 628
Query: 421 taaataaataaataaataaataaataaataaataaataaaattgttgaatcaggtagtca 480
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 629 taaataaataaataaataaataaataaataaa--------attgttgaatctggtagtca 680
Query: 481 tgtgcttttagtcttcctttaaatctttcaggaagcaccacacttgagaggaggtacttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgcttttagtcttcctttaaatctttcaggaagcaccacacttgagaggaggtacttc 740
Query: 541 aaaggatgagttcctaacttacaaatgcacaattcggtgacaaaaaaaa 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaggatgagttcctaacttacaaatgcacaattcggtgacaaaaaaaa 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
