Query= MSMg01no079_d18.b1 MSMg01no079_d18.b1 CHROMAT_FILE:
MSMg01no079_d18.b1 PHD_FILE: MSMg01no079_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:48 2005
(653 letters)
>mm_chr16_83325004_83326056
Length = 1053
Score = 1158 bits (599), Expect = 0.0
Identities = 638/653 (97%), Gaps = 7/653 (1%)
Strand = Plus / Plus
Query: 1 gaggcatgactcatgaacagagcacaagacatagagaaataatcttgggtcttggggatg 60
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 gaggcatgactgatgaacagagcacaagacatatagaaataatcttgggtcttggggatg 260
Query: 61 agacagaagatataattatgtcagccaaagaaaaaggtaatcaaatgtatgtcctccttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacagaagatataattatgtcagccaaagaaaaaggtaatcaaatgtatgtcctccttt 320
Query: 121 tccactagctgtcattgtgtgcacatatgtcattatataaatacatcccttagtatagcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tccactagctgtcattgtgtgcacatatgtcattatataaatacatcccttactatagcc 380
Query: 181 tgcttagtcctatgttagctgtatggttttttttg--ttttgttttgttttgttttgttt 238
||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||
Sbjct: 381 tgcttagtcctatgttagctgtatg--tttttttggtttttgttttgtt--gttttgttt 436
Query: 239 cagtgctgagaagttaacattagacaatgaattgctgaattctcctccagaaaagaattc 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cagttctgagaagttaacattagacaatgaattgctgaattctcctccagaaaagaattc 496
Query: 299 taaaaagcttggctaagaatcatattcagcttgctaattaaaaaa-tttaaagtgtcatt 357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 497 taaaaagcttggctaagaatcatattcagcttgctaattaaaaaaatttaaagtgtcatt 556
Query: 358 aataataaacttttaagctgacaaaaatgacaaatggtttcaagaactaatcatttctta 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 557 aataataaacttttaagctgacaaaaatgacaaatggtttcaagaactaatcatttatta 616
Query: 418 ctatatggaatttgtctcaaaatcatgaaatcaatgaagcaaaatgaagtaatcctcaat 477
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 617 ctatatggaatttgtctcaaaatcatgaaaacaatgaagcaaaatgaagtaatcctcaat 676
Query: 478 atgccataatgctacacagattccatttctaccttcacaaatgctacactgagataaaat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atgccataatgctacacagattccatttctaccttcacaaatgctacactgagataaaat 736
Query: 538 aatatttgggatgaaatcattctttttatgttaaatctcagtagtttaaacattttgatg 597
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 737 aatatttgggatgaaatcattctttttatgttaaatctgagtagtttaaacactttgatg 796
Query: 598 tatgggagcccacattattagtaacaccagtgattccttttacttaaacaaca 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tatgggagcccacattattagtaacaccagtgattccttttacttaaacaaca 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_d18.g1 MSMg01no079_d18.g1 CHROMAT_FILE:
MSMg01no079_d18.g1 PHD_FILE: MSMg01no079_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:48 2005
(606 letters)
>mm_chr16_83469909_83470914
Length = 1006
Score = 1164 bits (602), Expect = 0.0
Identities = 605/606 (99%)
Strand = Plus / Minus
Query: 1 tctgccatgattcttccaatggaaagggctttgttatcacaagtgagtgccacctctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tctgccatgattcttccaatggaaagggctttgttatcacaagtgagtgccacctctgtt 747
Query: 61 ggctctctttacctgaaagaatccacttagttaaactacagacctcacagaaatgaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggctctctttacctgaaagaatccacttagttaaactacagacctcacagaaatgaaacc 687
Query: 121 tctgaagccaagatcaattcaggccttgactcacagacatggtcttccctaggtcagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tctgaagccaagatcaattcaggccttgactcacagacatggtcttccctaggtcagtga 627
Query: 181 tttcatttttcatgggccactttttgcaatgctttcaactccatgccttgattctctgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttcatttttcatgggccactttttgcaatgctttcaactccatgccttgattctctgaa 567
Query: 241 aaatgacttctggcttggctataaaaagatgtccttaagaatgtaaaaatgcatttaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaatgacttctggcttggctataaaaagatgtccttaagaatgtaaaaatgcatttaaaa 507
Query: 301 acatataaagggtaaaaaccttcttcccatttttggctatgtccaatcattggatatatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acatataaagggtaaaaaccttcttcccatttttggctatgtccaatcattggatatatc 447
Query: 361 tttatcagagctaaaccaaaaccaaaagcagtacataacaatctcattctagtcatcaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttatcagagctaaaccaaaaccaaaagcagtacataacaatctcattctagtcatcaat 387
Query: 421 aggaagaaatccattatttctgatcataaatatttagctaaatatttttaatataatgag 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 386 aggaagaaatccattatttctgatcataaacatttagctaaatatttttaatataatgag 327
Query: 481 ctgctgattgatacaaaatagtgtattgtagtttaatttgccttactgatgtctttattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgctgattgatacaaaatagtgtattgtagtttaatttgccttactgatgtctttattt 267
Query: 541 aaacctaaatttcttgtttaaaaataatttaagtcctacaaagatttgttaattgctgag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaacctaaatttcttgtttaaaaataatttaagtcctacaaagatttgttaattgctgag 207
Query: 601 gaattg 606
||||||
Sbjct: 206 gaattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
