Query= MSMg01no079_k19.b1 MSMg01no079_k19.b1 CHROMAT_FILE:
MSMg01no079_k19.b1 PHD_FILE: MSMg01no079_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:22 2005
(537 letters)
>mm_chr16_64434718_64435654
Length = 937
Score = 897 bits (464), Expect = 0.0
Identities = 518/536 (96%), Gaps = 4/536 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactac-atccctacccttattctgaccacaaactaggaactattacctgtcat 62
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ggaattcactacaatgcctacccttattctgaccacaaactaggaactattacctgtcat 678
Query: 63 tgggtttgtatcatctttaagtcagactcaggcttttgtagcaaacttctcgggagaaca 122
||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 677 tggttttgtatcatctttgggtcagactcaggcttttatagcaaacttctctggagaaca 618
Query: 123 agcaa-gactccaataagaaatggcattatatcttgtgacagtgcattttgactaataaa 181
||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 617 agcaagga-tccaataagaaatgccattatatcttctgacaatgcattttgactaataaa 559
Query: 182 gcaaagaacctgtcactaggctcaaacttaaagactcttcaactttctaattttgccacc 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcaaagaacctgtcactaggctcaaacttaaagactcttcaactttctaattttgccacc 499
Query: 242 ctggagttcaaagtacaacaatagaaaactgtgtggcataactaaaccatgcccaagatt 301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 498 ctggagttcaaagtacaacaatagaaaactgtggggcataactaaaccatgcccaagatt 439
Query: 302 ggtataggtaagtcaaaaagttaagtcaaactatgtcctcatcacttaacatcagagaat 361
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 438 ggtataggtaagtcaaaaagttaagt-taactatgtcctcatcacttaacatcagagaat 380
Query: 362 agcgtttttctgttcactgattttttttttcccctgaaagctgacctaagaccttactaa 421
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agagtttttctgttcattgattttttttttcccctgaaagctgacctaagaccttactaa 320
Query: 422 gagaaggtggcagaaataattgacccaaatctgggtttaagacttgagaaaatttcttgc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gagaaggtggcagaaataattgacccaaatctgggtttaagacttgagaaaatttcttgc 260
Query: 482 cactttttatttgtgtcccacttcttttgtatttttgttttgttacaagacagggt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cactttttatttgtgtcccacttcttttgtatttttgttttgttacaagacagggt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_k19.g1 MSMg01no079_k19.g1 CHROMAT_FILE:
MSMg01no079_k19.g1 PHD_FILE: MSMg01no079_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:22 2005
(508 letters)
>mm_chr16_64287609_64288517
Length = 909
Score = 888 bits (459), Expect = 0.0
Identities = 495/507 (97%), Gaps = 1/507 (0%)
Strand = Plus / Plus
Query: 3 ggaggggactggaatgtaacttttggaatgtaaataaataatataatttaaaaatgtaca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaggggactggaatgtaacttttggaatgtaaataaataatataatttaaaaatgtaca 262
Query: 63 caatggccttttggaatctctactacaagtcactttttttcttaattgatttcctctcct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caatggccttttggaatctctactacaagtcactttttttcttaattgatttcctctcct 322
Query: 123 ctatatggctccatccaatcttaaaacagtgccttgactttgtgttatcatttactcaat 182
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 ctatatggctccatccagtcttaacacagtgccttgactttgtgttatcatttactcaat 382
Query: 183 ccaaatgtgctggcaggtaagaacatttgtatgtgctgatgcttctgcctggatttctcc 242
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 383 tcaaatgtgctggcaggtaagaacatttgtgtgtgctgatgcttctgccaggatttctcc 442
Query: 243 ttgcatccacccacatgaccctttcaaatcagttcttggtctgtgttaatgctgtcatag 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgcatccacccacatgaccctttcaaatcagttcttggtctgtgttaatgctgtcatag 502
Query: 303 tggagagactgttttatcatgattgtttgcccataataattacaactatttgagtgcttg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggagagactgttttatcatgattgtttgcccataataattacaactatttgagtgcttg 562
Query: 363 tatatcactaagtcactatttgtacacatctgaagttttggggg-tcataattctttttg 421
||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 563 tatatcactgagtcactatttgtactcatctgaagttttggggggtcataattctttttg 622
Query: 422 tttactgtttcatattcagctcttcaactagtatctggtctgatatatatagtaaagcat 481
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 623 tttactgtttcatattcagctcttcaactagtatctggtctgatacatatagtaaaacat 682
Query: 482 ttatgatttaactctgaaactgggatc 508
||||||||||| |||||||||||||||
Sbjct: 683 ttatgatttaattctgaaactgggatc 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
