Query= MSMg01no080_k24.b1 MSMg01no080_k24.b1 CHROMAT_FILE:
MSMg01no080_k24.b1 PHD_FILE: MSMg01no080_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:40 2005
(347 letters)
>mm_chr16_34973092_34973837
Length = 746
Score = 617 bits (319), Expect = 0.0
Identities = 340/347 (97%), Gaps = 1/347 (0%)
Strand = Plus / Minus
Query: 1 gccttgatattatttaatctaaataccctttggctggtaggacctaacaattaaaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gccttgatattatttaatctaaataccctttggctggtaggacctaacaattaaaaataa 437
Query: 61 aaaatctcatttcagcagtcagagagcttgaaggctggcttcctgagaattagaaaggac 120
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 436 aaaatctcatttcagtagtcagagagcttgaaggctggctttctgagaattagaaaggac 377
Query: 121 ttgatccacagcagctacgtagatgctaaaaatgctccagggctacttttaagtggaaaa 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 376 ttgatccacagcagctacgtagatgct-aaaatgctccagggctacttttaagtggaaaa 318
Query: 181 caaaccagaatacaggaaaaagtcaacccatcactcttttaatagccgtctatggccgag 240
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 317 caaaccagaatacagggaaaagtcaacccatcactcttttaatagcagtctatggccgag 258
Query: 241 cactgagcctcacagaacaattctacctaatcccacagcatccactgtgtgtgtgtgtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 257 cactgagcctcacagaacaattctacctaatcccacagcatccactgtgtgtgtgtgaga 198
Query: 301 gagaagagagagagagagagagagagagagagagagagagagagaga 347
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 197 gagaagagagagagagagagagagagagagagagagagacagagaga 151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 746
Length adjustment: 9
Effective length of query: 338
Effective length of database: 737
Effective search space: 249106
Effective search space used: 249106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_k24.g1 MSMg01no080_k24.g1 CHROMAT_FILE:
MSMg01no080_k24.g1 PHD_FILE: MSMg01no080_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:40 2005
(246 letters)
>mm_chr16_34793077_34793722
Length = 646
Score = 443 bits (229), Expect = e-129
Identities = 241/245 (98%)
Strand = Plus / Plus
Query: 1 gggtttttggacccatctcctcctctttcaacatccctcaagaaagtgagagagagaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtttttggacccatctcctcctctttcaacatccctcaagaaagtgagagagagaagg 260
Query: 61 aatgagccagaaagttctaattatccagtctgctgacattgtttttatctgcgccactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgagccagaaagttctaattatccagtctgctgacattgtttttatctgcgccactga 320
Query: 121 tattaaatgtggacagcattccatttaaatcacagtaccaagaacgacttctgcaaactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaaatgtggacagcattccatttaaatcacagtaccaagaacgacttctgcaaactt 380
Query: 181 ggtcctttgtccttttgcctgatgcggccaacgttcagttttccaccctgccttgctctc 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 381 gggcctttatccttttgcctgatgcggccaacgttcagttttccaccctgcctcgctccc 440
Query: 241 cctca 245
|||||
Sbjct: 441 cctca 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
