BAC Information

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BAC

Clone NameMSMg01-081I07
Chromosome16 (Build37)
Map Location 4,279,271 - 4,279,818
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332
Downstream geneAdcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081I07.T7 (MSMg01no081_i07.b1)MSMg01-081I07.TJ (MSMg01no081_i07.g1)
ACCAG302102AG302103
length691694
length of high quality
(start - end)
521 (39 - 559)545 (69 - 613)
definitionCHROMAT_FILE: MSMg01no081_i07.b1 PHD_FILE: MSMg01no081_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:45 2005CHROMAT_FILE: MSMg01no081_i07.g1 PHD_FILE: MSMg01no081_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCTT
TCTTTCCTTTTTTGAGATTATATATTCTTATCTTATGTGTATGGGTGTTT
TGCCTCATGTATGTTTGTGTACCATATATGTGCCTGGTGCCCTCAGAGGC
CAGAAGTGAAGATTGAATCTCTTTGAACTAGAGTTATAGACAGTTGAGAG
CTGCCATATAGGTGATGGGAACCAGACCCAGATTCTCTGGAAGAGCAGTC
AGTCTATTAACCTCTGAGCTACCTCTCCAGCCCCTGGAGTTATGTCTTAA
TTTCATTTTTAATTCTTTATTGATATTATATAGAATATCAAGTCTAGCTT
CTTATACTGATCCTGTATATTATGAGCATTCTAAATTTGCTTATCAGCTT
TGGTAGTGGTTTTGTAGCGTCATTCAGATATTTTTAAGTAGGGCATCACC
CTTGTCACCTTTGAATATGAACAGTTTTCTTCCTTTTCTGATAACTGTTT
TAATTTCCTTTCTTGCCCAGTTGCACTGGCTAGAACCTCCTGTCCCATGG
TGTGTAGAACCAGAATAGGTTATACTCTTGCCTAGTATCTGACCCAAGAA
CCAGTTGTTGGTTGAATCTATTTTCCTGCTAATTGTTCCACTTTGGTTTC
GCGTAGGCTAGCAATCTTCATGTCTTTATGAAAAATCTTCC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGCTTAAGTTCCAGTTGATTCAAGGTCTTG
CCTGGGCTGGCCCAGGAGTGCAGGTGACATTTTTCCTTTGTATGCTCAAA
GCTCTCAGGAGGTCACAGTGGCAGCTTTTTCTGGCTGACCTGAGAAAGAA
CTGGGGGTGATTCTCTGAGTTTCACAGGAGTATACTCAATACACATGGGA
ACCTATGAGGAGTAAGCTTGTACTGTCCACCTGGGCCATGAATGACGACT
AGACCTAGAAAATGTGTTAGACACAGTGTGAGGTTCACCAAGAAGTCTAA
GGGTTGCCAGGGTTGATATTGCACATGGTGGGCGAGGCTACGGAGGAATC
AGATGTCCAGTGTGACTCTGGGAAGCTTGAGCTGAGATCACCCTCAAGGT
GTTGCAAGGGATGCCAGCAGGGAGCCCCAGTTTTTGTAGTAGTGACACTG
GCGAGGGAGGGGGCTGCTTTCCTGGAGTTCCAGTAACTGTTGCCGAATGT
ATGATAGTTCCCTAGCTGTGCCATGCTTCCTGTTACACTCACATGTCTAA
AGCCTGTTGCAATTCTGCTGGCAAATGGACAGTTGTATAAGGAGAGGAAA
AAATTTAGAAACGAGCTGAAAAGGGTGGAAATGGCCCCTTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_i07.g1 MSMg01no081_i07.g1 CHROMAT_FILE:
MSMg01no081_i07.g1 PHD_FILE: MSMg01no081_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:45 2005
         (545 letters)



>mm_chr16_4279071_4280018
          Length = 948

 Score = 1017 bits (526), Expect = 0.0
 Identities = 542/548 (98%), Gaps = 3/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcttaagttcca-gttgattcaaggtcttgcctgggctggcccaggagtgcaggtga 59
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcttaagttccaagttgattcaaggtcttgcctgggctggcccaggagtgcaggtga 260

                                                                       
Query: 60  catttttcctttgtatgctcaaagctctcaggaggtcacagtggcagctttttctggctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttttcctttgtatgctcaaagctctcaggaggtcacagtggcagctttttctggctg 320

                                                                       
Query: 120 acctgagaaagaactgggggtgattctctgagtttcacaggagtatactcaatacacatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgagaaagaactgggggtgattctctgagtttcacaggagtatactcaatacacatg 380

                                                                       
Query: 180 ggaacctatgaggagtaagcttgtactgt--ccacctgggccatgaatgacgactagacc 237
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 381 ggaacctatgaggagtaagcttgtactgtttccacctgggccatgaatgacgactagacc 440

                                                                       
Query: 238 tagaaaatgtgttagacacagtgtgaggttcaccaagaagtctaagggttgccagggttg 297
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaaatgtggtagacacagtgtgaggttcaccaagaagtctaagggttgccagggttg 500

                                                                       
Query: 298 atattgcacatggtgggcgaggctacggaggaatcagatgtccagtgtgactctgggaag 357
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 atattgcacatggtgggcgaggctacagaggaatcagatgtccagtgtgactctgggaag 560

                                                                       
Query: 358 cttgagctgagatcaccctcaaggtgttgcaagggatgccagcagggagccccagttttt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgagctgagatcaccctcaaggtgttgcaagggatgccagcagggagccccagttttt 620

                                                                       
Query: 418 gtagtagtgacactggcgagggagggggctgctttcctggagttccagtaactgttgccg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagtagtgacactggcgagggagggggctgctttcctggagttccagtaactgttgccg 680

                                                                       
Query: 478 aatgtatgatagttccctagctgtgccatgcttcctgttacactcacatgtctaaagcct 537
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgtatgatagctccctagctgtgccatgcttcctgttacactcacatgtctaaagcct 740

                   
Query: 538 gttgcaat 545
           ||||||||
Sbjct: 741 gttgcaat 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 948
Length adjustment: 10
Effective length of query: 535
Effective length of database: 938
Effective search space:   501830
Effective search space used:   501830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)