BAC Information

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BAC

Clone NameMSMg01-081L19
Chromosome16 (Build37)
Map Location 73,397,919 - 73,398,393
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081L19.T7 (MSMg01no081_l19.b1)MSMg01-081L19.TJ (MSMg01no081_l19.g1)
ACCAG302270AG302271
length728719
length of high quality
(start - end)
581 (46 - 626)472 (70 - 541)
definitionCHROMAT_FILE: MSMg01no081_l19.b1 PHD_FILE: MSMg01no081_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:02 2005CHROMAT_FILE: MSMg01no081_l19.g1 PHD_FILE: MSMg01no081_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTTCCCTACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATT
CCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAACATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCCTGGAGGGCATCATCCTGAGTGAGGTAACCCATTCACAAA
GGAACTCACACAATATGTACTCACTGATAAGTGGATATTACCCCAAAACC
TAGGATACCCCAAGATATGAGATACAATTTCCTAAACACTTGAAACTCAA
GAAAAATGAAGACCGAACTGTGGACACT
CGATGAAGTGGGAGCCTGGCGGCGCCTGTTCACACATGTAGGTGACCTAT
AGAAGTTCCACAGAAATCCAGCTTTCATCCACCTAGCCCATGCCATGTAC
TGACTTCTTCAACCCACTAAATATAAAAGAAAGACAGTCATGCCAACCCC
CTGGTCCATCAGCTTGGAAGAGAATGTGTTCCTAGTTGAGTCTGTAAACC
AGGCCTTTTCCCTCTTCTTAGAATCATATGAGGGACTCAAACTCCAAAGC
CTTAGAAACAAACTGAGCTGATCACAGACTCCTGTCCCAGAGAAGCTGTG
TGATACTAAGCCCCTTTTTTTGTTGCAATTTGTTATGTGAAAATAGATAT
ACAAAAATAACTTTAGGTGAAGTTCACTAAAGGGAAGTCAATCTCCTTGT
ATCTCAGCCCGCAGTGGATATTCATGCAACATATGAAGAGGACAGTTTGT
TCCATTTCTACACCAAACAGGCTGACCTACACATCTGTGAGTTTTCTAGT
ACTGAGCTGAGATACGCACTGCTGTTTCTTCTGTGCTGCCTACTCTTTGT
TTCTTATGGGGATTGCATGCTCATTTCCAGTTCTGAATCTTTCAGTGTAC
TCCTTTGTCTCTATCTTCCTCTAGATGCGCTTGTTCTCCTAGAAACAAGC
CTTTCCTCTAGCGCAATCTTCAACAACAAAATGCAGGAGTACTTAGGGTT
TGAAGTTTAATGACTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_l19.g1 MSMg01no081_l19.g1 CHROMAT_FILE:
MSMg01no081_l19.g1 PHD_FILE: MSMg01no081_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:02 2005
         (472 letters)



>mm_chr16_73397722_73398593
          Length = 872

 Score =  762 bits (394), Expect = 0.0
 Identities = 455/476 (95%), Gaps = 5/476 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctttcatccacctagcccatgccatgtactgacttcttcaacccactaaatataaaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 198 agctttcatccacctagcccatgccatgtactgacttcttcaacccactaaacataaaag 257

                                                                       
Query: 61  aaagacagtcatgccaaccccctggtccatcagcttggaagagaatgtgttcctagttga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 258 aaagacagtcatgccaaccccctggtccatcagcttggaagagaatgtgttcctagttaa 317

                                                                       
Query: 121 gtctgtaaaccaggccttttccctcttcttagaatcatatgagggactcaaactccaaag 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttctgtaaaccaggccttttccctcttcttagaatcatatgagggactcaaactccaaag 377

                                                                       
Query: 181 ccttagaaacaaactgagctgatcacaga--c-tcctgtcccagagaagctgtgtgatac 237
           |||||| ||||||||||||||||||||||  | || || ||||||||||||||| |||||
Sbjct: 378 ccttaggaacaaactgagctgatcacagattcttcttgccccagagaagctgtgagatac 437

                                                                       
Query: 238 taagcccctttttttgttgcaatttgttatgtgaaaatagatatacaaaaataactttag 297
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 438 taagccccttcatttgttgcaatttgttatgtgaaaatagatatacaaaaatatctttag 497

                                                                       
Query: 298 gtgaagttcactaaagggaagtca-atctccttgtatctcagcccgcagtggatattcat 356
           ||||| |||||||||||||||| | || |||||||||||||||| |||||||||||||||
Sbjct: 498 gtgaaattcactaaagggaagt-agatttccttgtatctcagcctgcagtggatattcat 556

                                                                       
Query: 357 gcaacatatgaagaggacagtttgttccatttctacaccaaacaggctgacctacacatc 416
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 557 gcaacatatgaagagtacagtttgttccatttctacaccaaacaggttgacctacacatc 616

                                                                   
Query: 417 tgtgagttttctagtactgagctgagatacgcactgctgtttcttctgtgctgcct 472
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 617 tgtgagttttctagtactgagctgagatacgcactactgtttcttctgtgctgcct 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)