Query= MSMg01no081_m24.b1 MSMg01no081_m24.b1 CHROMAT_FILE:
MSMg01no081_m24.b1 PHD_FILE: MSMg01no081_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:08 2005
(573 letters)
>mm_chr16_7290878_7291850
Length = 973
Score = 1077 bits (557), Expect = 0.0
Identities = 566/569 (99%)
Strand = Plus / Minus
Query: 5 gaattccacagtgaatgctcaagtcctgtcacattgcctacggaagtcatgctgcgtgga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gaattccacagtgaatgctcaagtcctgtcacattgcctacggaagtcatgctgcgtgga 905
Query: 65 tttaagaacagttcttcttcatgcaattttagggttattcaagtctgtcaactgtacagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tttaagaacagttcttcttcatgcaattttagggttattcaagtctgtcaactgtacagc 845
Query: 125 ctttgcttctcaaaaaataaaaggaacaagcctaaaaaaaaggaaagaccttttttttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ctttgcttctcaaaaaataaaaggaacaagcctaaaaaaaaggaaagaccttttttttat 785
Query: 185 atataataaatcttgatcttgtggttctaataaacaaaaacataaatcacatgaaatgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 atataataaatcttgatcttgtggttctaataaacaaaaacataaatcacatgaaatgaa 725
Query: 245 tacaaataaatttttttggttaacaatgtagataagcaagttccgttctatgtctgtgct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tacaaataaatttttttggttaacaatgtagataagcaagttccgttctatgtctgtgct 665
Query: 305 ttgcccttccctccccttcccccaaataaaagtacaagacattggaatttgaccttttac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttgcccttccctccccttcccccaaataaaagtacaagacattggaatttgaccttttac 605
Query: 365 attagttcattaaccagaaaacaatgttattgggtctaggctggtagttatctgctatat 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 attagtttattaaccagaaaacaatgttattgggtctaggctggtagttatctgctatat 545
Query: 425 caacaggtagaaaacatattttccagatatggtgaatctgtgcagcacattgaaaccttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 caacaggtagaaaacatattttccagatatggtgaatctgtgcagcacattgaaaccttc 485
Query: 485 tttgacaaatagcaagtacaccctttgcttctcaagtatagtttttgctttcaatatttc 544
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 484 tttgacaaatagcaagtacaccctttgcttcacaagtatagtttttgcttttaatatttc 425
Query: 545 agtgtctaccacaaaccctactaacctat 573
|||||||||||||||||||||||||||||
Sbjct: 424 agtgtctaccacaaaccctactaacctat 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_m24.g1 MSMg01no081_m24.g1 CHROMAT_FILE:
MSMg01no081_m24.g1 PHD_FILE: MSMg01no081_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:08 2005
(491 letters)
>mm_chr16_7133501_7134391
Length = 891
Score = 934 bits (483), Expect = 0.0
Identities = 489/491 (99%)
Strand = Plus / Plus
Query: 1 ctaagatatagtctctatatagaatttaagtgaagcatacctgcaatgtgttcagttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagatatagtctctatatagaatttaagtgaagcatacctgcaatgtgttcagttgat 260
Query: 61 ttgggaggatttgtcagaaataaagtgtcagaacattgaaggacactacggtatgagtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggaggatttgtcagaaataaagtgtcagaacattgaaggacactacggtatgagtac 320
Query: 121 aggaaacaagccatcatatcagagaaatcaaggagcattaagctgtctgatagctacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaacaagccatcatatcagagaaatcaaggagcattaagctgtctgatagctacttt 380
Query: 181 tcaaatgtatttttgcttttttatgagaatttcatacatccaatggattttgaccatatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaatgtatttttgcttttttatgagaatttcatacatccaatggattttgaccatatc 440
Query: 241 tactttcttttcctgctcctatgagactcaaccttgccctatcccccttgtagtctcatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactttcttttcctgctcctatgagactcaaccttgccctatcccccttgtagtctcatg 500
Query: 301 tctttctctgtatatatgtgtgtgtatacatggcccactgtgctagcatattttttaaac 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tctttctctgtatatatgtgtgtgtatacatggcccactgtgctagtatattttttaaac 560
Query: 361 taatgtatctattttcatcacaaaataattggtatgattccagttgatctctgcaaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatgtatctattttcatcacaaaataattggtatgattccagttgatctctgcaaaatg 620
Query: 421 aatcagtctatgcagaagtgtgttaaggcagggtttccagatctgcattatgccttgctc 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 aatcagtctatgcagaagtgtgttaaggcagggtttccagatctgtattatgccttgctc 680
Query: 481 actgtcctagt 491
|||||||||||
Sbjct: 681 actgtcctagt 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
