BAC Information

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BAC

Clone NameMSMg01-083B10
Chromosome16 (Build37)
Map Location 31,884,410 - 31,990,480
singlet/doubletdoublet
Overlap geneMfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1
Downstream genePak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083B10.T7 (MSMg01no083_b10.b1)MSMg01-083B10.TJ (MSMg01no083_b10.g1)
ACCAG303304AG303305
length736735
length of high quality
(start - end)
181 (39 - 219)226 (69 - 294)
definitionCHROMAT_FILE: MSMg01no083_b10.b1 PHD_FILE: MSMg01no083_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:43 2005CHROMAT_FILE: MSMg01no083_b10.g1 PHD_FILE: MSMg01no083_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(31,884,410 - 31,884,586)(31,990,255 - 31,990,480)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGACCGCGGAATTCAC
CCATACAAGCCCCGAAGTGGTTGTGGGCCCCGCCACAGTGTATCTGACAA
CCGGGGAGAGCCTAAATTCACAGTCTCTCGGGGTGGCCAATGACCAGTCA
TGAGGGCAAGCATTTGATAAAAGCGGTTTCTGGAGCCTTACCAATGAAGA
AAAGAGAAAATAAATAAATTATAAAACAAAAACCACAAAAATTGCAGGTC
AGACAGCTTGACTGCCTCTTCTCTGATCTCTACCCCTCCTTTGGTAAAAC
TGCTGGCCACTGCTCAGATTATGAACTCGATAGCGAGAGCAGGATCCAGT
TTGCATTCATCTGTGCTGTGAAGACCTTTACAGAAAACGTTTTATTTCTC
AGTCACAGTAATAGTCTAACCCGTGTCCCAGTCTGGTGAATACTGTCGTG
ATCTAATCCCCGGATTTTTTCACTTGACTCTGATAGGTGTACGTTTGCTT
GACGCCTCTCTTGTCTCCGCTCGTCGAATGTATAGATTCCGATCTCTTTT
CGCTACGTCCTTTGACATTGAGTTACTTATAACACTTATAATTCACCATC
TACAGCATATTTTTCTAATATCACATATTTATAGTATATATACAAAATTC
AAAACATTATCACTATTTATTTATTCACCTCCCCTCTATTCCCAAATCTT
TTTATTCTTACTATTTTATATAATGAACTAAATTAC
AATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTAGCCTTTTCTGAGAAATGGAATGCTGGG
TTTGGAAGCTTTAAGAAGTTCTACTTTCCCCAAAACTTGTGCTTTCTGAA
AGCTAAGCTGGGAAGGCCAGTTGCTTGGCATCGGCAGGTGAAGCATTTCC
AGTGTAATAAGGGTCTTCACATCCAGAAAACATGGATTCAAGATGTACCG
TTTTGTTCAAAGACAAAGTCTGGACTGGCTACTCAAAATGTTAGTACTTT
GTACCCCAAAGTGAAAAGAAAGGACAGTAAGCACTTCATTTCCTCCTCAA
GGAGTCTCCTGAAACTCCAAGCAGATAAATTACTGTCTTCAGCAAAGAGC
TTGGACCATAAATACTGCAGAGAGAATAGCCTTTCTGAAGGCAGCTCCTG
GCTTGTCAGCAAACACTGTTTTAGGTATAGCCAATGGTCACGAACCTACC
ACAGACCCACAAGCTTCAGACTTTCCCATGAATTTCAGTGGGGAGAGCCA
AAGACCCAGGTGACAGAGGCAAGACTGGGGCCTTGAATAAACATATAATG
CGAGTTTGACATGGTTGCTACCATAGGTTTAAACTCCACATGTAAAGGAG
ACCCCTGAATCCAAAGCAGTTCCAGCTTAATCAAAACCGAAAAGCTGAGC
GCCTCCTGATGAGTACCGAAAATTATCCCTTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_b10.b1 MSMg01no083_b10.b1 CHROMAT_FILE:
MSMg01no083_b10.b1 PHD_FILE: MSMg01no083_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:43 2005
         (181 letters)



>mm_chr16_31884206_31884786
          Length = 581

 Score =  335 bits (173), Expect = 1e-96
 Identities = 176/177 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacccatacaagccccgaagtggttgtgggccccgccacagtgtatctgacaacc 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcacccatacaagccccgaagtggttgtgggccccgccacagtgtaactgacaacc 264

                                                                       
Query: 65  ggggagagcctaaattcacagtctctcggggtggccaatgaccagtcatgagggcaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggagagcctaaattcacagtctctcggggtggccaatgaccagtcatgagggcaagca 324

                                                                    
Query: 125 tttgataaaagcggtttctggagccttaccaatgaagaaaagagaaaataaataaat 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgataaaagcggtttctggagccttaccaatgaagaaaagagaaaataaataaat 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no083_b10.g1 MSMg01no083_b10.g1 CHROMAT_FILE:
MSMg01no083_b10.g1 PHD_FILE: MSMg01no083_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:43 2005
         (226 letters)



>mm_chr16_31990055_31990680
          Length = 626

 Score =  437 bits (226), Expect = e-127
 Identities = 226/226 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttagccttttctgagaaatggaatgctgggtttggaagctttaagaagttctactttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acttagccttttctgagaaatggaatgctgggtttggaagctttaagaagttctactttc 367

                                                                       
Query: 61  cccaaaacttgtgctttctgaaagctaagctgggaaggccagttgcttggcatcggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cccaaaacttgtgctttctgaaagctaagctgggaaggccagttgcttggcatcggcagg 307

                                                                       
Query: 121 tgaagcatttccagtgtaataagggtcttcacatccagaaaacatggattcaagatgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgaagcatttccagtgtaataagggtcttcacatccagaaaacatggattcaagatgtac 247

                                                         
Query: 181 cgttttgttcaaagacaaagtctggactggctactcaaaatgttag 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cgttttgttcaaagacaaagtctggactggctactcaaaatgttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)