BAC Information

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BAC

Clone NameMSMg01-083E02
Chromosome16 (Build37)
Map Location 4,279,271 - 4,279,792
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332
Downstream geneAdcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083E02.T7 (MSMg01no083_e02.b1)MSMg01-083E02.TJ (MSMg01no083_e02.g1)
ACCAG303429AG303430
length701701
length of high quality
(start - end)
509 (43 - 551)520 (70 - 589)
definitionCHROMAT_FILE: MSMg01no083_e02.b1 PHD_FILE: MSMg01no083_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:56 2005CHROMAT_FILE: MSMg01no083_e02.g1 PHD_FILE: MSMg01no083_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCTTTAACTTTTTTGAGATTTATATATTCTTATCTTATGTGTATGG
GTGTTTTGCCTCATGTATGTTTGTGTACCATATATGTGCCTGGTGCCCTC
AGAGGCCAGAAGTGAAGATTGAATCTCTTTGAACTAGAGTTATAGACAGT
TGAGAGCTGCCATATAGGTGATGGGAACCAGACCCAGATTCTCTGGAAGA
GCAGTCAGTCTATTAACCTCTGAGCTACCTCTCCAGCCCCTGGAGTTATG
TCTTAATTTCATTTTTAATTCTTTATTGATATTATATAGAATATCAAGTC
TAGCTTCTTATACTGATCCTGTATATTATGAGCATTCTAAATTTGCTTAT
CAGCTTTGGTAGTGGTTTTGTAGCGTCATTCAGATATTTTTAAGTAGGGC
ATCACCCTTGTCACCTTTGAATATGAACAGTTTTCTTCCTTTTCTGATAA
CTGTTTTAACTTCCTTTCTTGCCCAGTTGCACTGGCTAGAACCTCCTGTC
CCATGGCGTGCACAACCCGACAAGGTTATACTCTTGTCTAGTATTTGACC
TTACAACTTGTTGTTGTTCGACTCTTTTTTTCTGCTCCTTGTTCTACTTT
GGTTTCCGCTATTCTATCTTATTTTTTGCCCTCTACCAACACCCATTCAC
T
ATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCTTAAGTTCCAAGTTGATTCAAGGTCT
TGCCTGGGCTGGCCCAGGAGTGCAGGTGACATTTTTCCTTTGTATGCTCA
AAGCTCTCAGGAGGTCACAGTGGCAGCTTTTTCTGGCTGACCTGAGAAAG
AACTGGGGGTGATTCTCTGAGTTTCACAGGAGTATACTCAATACACATGG
GAACCTATGAGGAGTAAGCTTGTACTGTCCACCTGGGCCATGAATGACGA
CTAGACCTAGAAAATGTGGTAGACACAGTGTGAGGTTCACCAAGAAGTCT
AAGGGTTGCCAGGGTTGATATTGCACATGGTGGGCGAGGCTACGGAGGAA
TCAGATGTCCAGTGTGACTCTGGGAAGCTTGAGCTGAGATCACCCTCAAG
GTGTTGCAAGGGATGCCAGCAGGGAGCCCCAGTTTTTGTAGTAGTGACAC
TGGCGAGGGAGGGGGCTGCTTTCCTGGAGTTCCAGTAACTGTTGCCGAAT
GTATGATAGCTCCCTAGCTGTGCCATGCTTCCTGTTACACTCACATGTCT
AAAGCCTGTTGCAATTCTGCTGGCAAATGGACAGTTGTATAAGGAAAGGA
AAAAATTTAGAAACGAGCTGAAAAGGCCGCACATGGCCCCTTGAATTATT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_e02.g1 MSMg01no083_e02.g1 CHROMAT_FILE:
MSMg01no083_e02.g1 PHD_FILE: MSMg01no083_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:56 2005
         (520 letters)



>mm_chr16_4279071_4279992
          Length = 922

 Score =  990 bits (512), Expect = 0.0
 Identities = 519/522 (99%), Gaps = 2/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcttaagttccaagttgattcaaggtcttgcctgggctggcccaggagtgcaggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcttaagttccaagttgattcaaggtcttgcctgggctggcccaggagtgcaggtga 260

                                                                       
Query: 61  catttttcctttgtatgctcaaagctctcaggaggtcacagtggcagctttttctggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttttcctttgtatgctcaaagctctcaggaggtcacagtggcagctttttctggctg 320

                                                                       
Query: 121 acctgagaaagaactgggggtgattctctgagtttcacaggagtatactcaatacacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgagaaagaactgggggtgattctctgagtttcacaggagtatactcaatacacatg 380

                                                                       
Query: 181 ggaacctatgaggagtaagcttgtactgt--ccacctgggccatgaatgacgactagacc 238
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 381 ggaacctatgaggagtaagcttgtactgtttccacctgggccatgaatgacgactagacc 440

                                                                       
Query: 239 tagaaaatgtggtagacacagtgtgaggttcaccaagaagtctaagggttgccagggttg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaaatgtggtagacacagtgtgaggttcaccaagaagtctaagggttgccagggttg 500

                                                                       
Query: 299 atattgcacatggtgggcgaggctacggaggaatcagatgtccagtgtgactctgggaag 358
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 atattgcacatggtgggcgaggctacagaggaatcagatgtccagtgtgactctgggaag 560

                                                                       
Query: 359 cttgagctgagatcaccctcaaggtgttgcaagggatgccagcagggagccccagttttt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgagctgagatcaccctcaaggtgttgcaagggatgccagcagggagccccagttttt 620

                                                                       
Query: 419 gtagtagtgacactggcgagggagggggctgctttcctggagttccagtaactgttgccg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagtagtgacactggcgagggagggggctgctttcctggagttccagtaactgttgccg 680

                                                     
Query: 479 aatgtatgatagctccctagctgtgccatgcttcctgttaca 520
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgtatgatagctccctagctgtgccatgcttcctgttaca 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 922
Length adjustment: 10
Effective length of query: 510
Effective length of database: 912
Effective search space:   465120
Effective search space used:   465120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)