Query= MSMg01no083_k22.b1 MSMg01no083_k22.b1 CHROMAT_FILE:
MSMg01no083_k22.b1 PHD_FILE: MSMg01no083_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:28 2005
(237 letters)
>mm_chr16_13959475_13960111
Length = 637
Score = 451 bits (233), Expect = e-131
Identities = 236/237 (99%)
Strand = Plus / Minus
Query: 1 cagagcaggcatacatcagggacagggctcaattacactgaactgctagtaagccttagg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 437 cagagcaggcatacatcagggacagggctcaattacactgaattgctagtaagccttagg 378
Query: 61 actgaaagcaccaaagtactaggagcacagactgcaccagtcacaatgcatgccaggggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 actgaaagcaccaaagtactaggagcacagactgcaccagtcacaatgcatgccaggggc 318
Query: 121 cactcattttcctggtacatttcccaccagatacacctttctatagcccagaactgtcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cactcattttcctggtacatttcccaccagatacacctttctatagcccagaactgtcta 258
Query: 181 gcccacaatgttctttggtgcagactgccctgtttaatgcgtaaaaagggaagacaa 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcccacaatgttctttggtgcagactgccctgtttaatgcgtaaaaagggaagacaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no083_k22.g1 MSMg01no083_k22.g1 CHROMAT_FILE:
MSMg01no083_k22.g1 PHD_FILE: MSMg01no083_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:28 2005
(498 letters)
>mm_chr16_13829041_13829938
Length = 898
Score = 920 bits (476), Expect = 0.0
Identities = 494/500 (98%), Gaps = 2/500 (0%)
Strand = Plus / Plus
Query: 1 ttagggagcacatactctgagctgtatagaaacaattactcttctggcaggagcggtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttagggagcacatactctgagctgtatagaaacaattactcttctggcaggagcggtctt 258
Query: 61 tgtaatcttgagaaaatgaaaacagccgggcgtggtggcgcacgcctttaatcccagcac 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 259 tgtaatcttgagaaaatgaaaacagccgggcgtggtggcacacgcctttaatcccagcac 318
Query: 121 tcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaagtgagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaagtgagtt 378
Query: 181 ccaggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccaggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaa 438
Query: 241 aaaaaaaaagagtgagagaga-a-aatgaaaacagcaatgatagccttttttgttagatc 298
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaaaaaaagagagagagagagagaatgaaaacagcaatgatagccttttttgttagatc 498
Query: 299 agtacaagagaagacacggttatgtatcggttgtgtaatagatattcactagtgctacac 358
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 agtacaagagaagacacggttatgtttcggttgtgtaatagatattcactagtgctacac 558
Query: 359 acataccttggagcagcctgccatcgaggaacctggcattgtggctcaagcctttgaaag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acataccttggagcagcctgccatcgaggaacctggcattgtggctcaagcctttgaaag 618
Query: 419 gttcattccccttcttagaatccattctaagaaaatcatctaaagtgtgcacagagagag 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gttcactccccttcttagaatccattctaagaaaatcatctaaagtgtgcacagagagag 678
Query: 479 gctggcaggatggctcagtg 498
||||||||||||||||||||
Sbjct: 679 gctggcaggatggctcagtg 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
