BAC Information

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BAC

Clone NameMSMg01-084E08
Chromosome16 (Build37)
Map Location 51,051,762 - 51,052,363
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084E08.T7 (MSMg01no084_e08.b1)MSMg01-084E08.TJ (MSMg01no084_e08.g1)
ACCAG304174AG304175
length697697
length of high quality
(start - end)
582 (43 - 624)602 (72 - 673)
definitionCHROMAT_FILE: MSMg01no084_e08.b1 PHD_FILE: MSMg01no084_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:15 2005CHROMAT_FILE: MSMg01no084_e08.g1 PHD_FILE: MSMg01no084_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGTGTTCTTTATATATATTGGATATTAGTCTACTAT
TTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAATTTTGCAACTTTATGAG
GTCCCACTTGTTGATTCTTGATCTTAAAAAAAGCACAAGCCATTGTTCTT
CCATTCAGGAATTTTTCCCCTGTAGCCATATCTTCAAGGCTTTTCCTATT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCATTAAT
CCACTTAGATTTGACATTACTACAAGGTGGGAATGGATCAATTTGCATTC
TTCTGCATGATAACCACCAGTTGTGCCCGCACCATTTGTTGAAAATGCTT
TCTTTTTTCCACTGGATGGCTTTAGCTCCCTTGTCAAAGATCAAGTGACC
ATAGGTGTGGGGGTTCATCTCTGGATCTTCAATTCTATTCCATTGGTCTA
CTTGTCTGTCTCTATACCAGTACTGTGCCGGTTTTATCACAATTGTTCTG
TAGTACAGCTTTAGGCCAGGCATGGTGATTCCACCAGAGGTTCTTTC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATGAAGTAAAGAAAACCTCTGATAAGAC
TACACATGGCAGAGTTGTCTCAGCACCTGCTCTGACTGACAGCCCAAATG
AAGCTCCTTTGTGAGTTCTCTGGTACATGTGCAGTGTGCGGTGTGAATGG
AAATGGTCTCCAAAGGTTCATAGAGAGTGGCACTATTAGGTCTTGTTAGA
ATAGGCATGGCCTTATTAGAAGAAGCATATTACTAGGGGGTGAGCTTTTA
GGTTTCAGAAGCTCAAGCTAGGTCTAGCATCTCACTTTTTTTGTGTGCCA
CCTACTGATCTAGATGTAGAATTCTCAGCTACCTCTCCAGGACCATCTCC
GCCTGCATGCCACCATGTTCCCTACCACAATGATGAAGGACTAAATCTCT
GAACTGTAAGCTCTCCCCTATTAAATGTTTTCCTTTGTAAGAATTGCCGT
GGCCATGGTGTCTCTTTGCAGTGATAGAACACTACCTAAGACATGCAGTT
CCAGGCTTTCTGAAAAGAAACATGACAACTTGATTCACTGGCTGGAGTAA
AGTGAACTGTTGATTTTTGTCTACACATTGGAAGGACATCAGCTGCTCTA
TCAGTGGTGAGCTTATCGTGTCATCTAGCGGTTCCAGGCATGGTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_e08.g1 MSMg01no084_e08.g1 CHROMAT_FILE:
MSMg01no084_e08.g1 PHD_FILE: MSMg01no084_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:15 2005
         (602 letters)



>mm_chr16_51051562_51052563
          Length = 1002

 Score = 1149 bits (594), Expect = 0.0
 Identities = 600/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaagtaaagaaaacctctgataagactacacatggcagagttgtctcagcacctgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaagtaaagaaaacctctgataagactacacatggcagagttgtctcagcacctgct 260

                                                                       
Query: 61  ctgactgacagcccaaatgaagctcctttgtgagttctctggtacatgtgcagtgtgcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgactgacagcccaaatgaagctcctttgtgagttctctggtacatgtgcagtgtgcgg 320

                                                                       
Query: 121 tgtgaatggaaatggtctccaaaggttcatagagagtggcactattaggtcttgttagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgaatggaaatggtctccaaaggttcatagagagtggcactattaggtcttgttagaa 380

                                                                       
Query: 181 taggcatggccttattagaagaagcatattactagggggtgagcttttaggtttcagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggcatggccttattagaagaagcatattactagggggtgagcttttaggtttcagaag 440

                                                                       
Query: 241 ctcaagctaggtctagcatctcactttttttgtgtgccacctactgatctagatgtagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaagctaggtctagcatctcactttttttgtgtgccacctactgatctagatgtagaa 500

                                                                       
Query: 301 ttctcagctacctctccaggaccatctccgcctgcatgccaccatgttccctaccacaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctcagctacctctccaggaccatctccgcctgcatgccaccatgttccctaccacaat 560

                                                                       
Query: 361 gatgaaggactaaatctctgaactgtaagctctcccctattaaatgttttcctttgtaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgaaggactaaatctctgaactgtaagctctcccctattaaatgttttcctttgtaag 620

                                                                       
Query: 421 aattgccgtggccatggtgtctctttgcagtgatagaacactacctaagacatgcagttc 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattgccgtggtcatggtgtctctttgcagtgatagaacactacctaagacatgcagttc 680

                                                                       
Query: 481 caggctttctgaaaagaaacatgacaacttgattcactggctggagtaaagtgaactgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggctttctgaaaagaaacatgacaacttgattcactggctggagtaaagtgaactgtt 740

                                                                       
Query: 541 gatttttgtctacacattggaaggacatcagctgctctatcagtggtgagcttatcgtgt 600
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 gatttttgtctacacattggaaggacatcagctgccctatcagtggtgagcttatcgtgt 800

             
Query: 601 ca 602
           ||
Sbjct: 801 ca 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)