BAC Information

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BAC

Clone NameMSMg01-084P22
Chromosome16 (Build37)
Map Location 69,575,517 - 69,576,156
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneSpeer2, EG664930, Gbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084P22.T7 (MSMg01no084_p22.b1)MSMg01-084P22.TJ (MSMg01no084_p22.g1)
ACCAG304700AG304701
length727731
length of high quality
(start - end)
274 (44 - 317)634 (73 - 706)
definitionCHROMAT_FILE: MSMg01no084_p22.b1 PHD_FILE: MSMg01no084_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:10 2005CHROMAT_FILE: MSMg01no084_p22.g1 PHD_FILE: MSMg01no084_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGATCCGCGGAATTC
AAGATTCCCAGTCCCATCTTTGGCTTCTTCTTTTTTTTTTTTTTCCTTTT
CCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAA
AAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCT
TTTTGGCCCTGGCGTTCCCCTATACTGGGGCATATAAAGTTTGCAAGTCC
AATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACAT
ATGCAGCTAGAGTCAACAGCTCCGTTGTACTGGTTAGTTCATAATGTTGT
TCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTTCTTTCTCTAG
CTCCTCCATTGGGAGCCCCGCGATCCATCCATTAGCTGACTGTGAGCATC
CACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACA
TCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGCTGTCAGCGT
TTGGATGCTGATTATGGAGCGGATATGGCAGTCTCTACATGGCCCATCCT
TCTCTCTCACCTCCAAACTTTGTCTCTGTAACTCCTTCCCAGGCTGTTTT
GTTCCCCCTTCTAAGGAGGGGCATAGTGTCCACCCTTCCGCTCTTATTTT
TCTTGAGTTTCATGTGCTCAGCCAATC
GATGATAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTAAATGAGAAATCATAAGGTACCAT
TTTGCAAAGTTATTCTATGTGAAACAAAATAATGACTTACAAAGATAAAC
AAAAGCTTAAAGCATTTATATTTGTTATTTCTTTTTTTTTACCTGTTATG
CTACAGGGAGTCTTTCAAATTCAAAGGAAAAAGCGGTAGAAAAGACTATC
AAGGTATATATGACAGTAGAAAGTTGAAAACACTCTGGTAATATCAATCA
TAAAACCAAAACACTTTAATACTATACTGAAGGAATTTGAGTCATCTTTG
CTTTGGATAACAGAACTTAAAGGGATATAGCATCAAAATAACTAAAATTA
TAAAATTATGTTGAAAAGCTTATTAAATATAACCTATCATTTCAAAGAAT
AAATTATAGGACTTAAAAAGATTCGAGTTACATAGTGGTGAAGATAAATT
ATCACCTTAAAACGGATTTTGTAAGTATAAAATATATACATAAGTCCCAT
GATAAAAGTATTTATAAAAGATACATACAACAATGTGAAAATGGATTAAA
ACAAGGTCAATATTTATAGTCTGAATGAAGGTAGAGAGAATGGGAGAGAG
ACAAAAATATTATATGAAAATAGTTACTGAAAGTCCAAGATTTACTTTTT
GCTAAGCGTAATTAAGTTAAAATACATTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_p22.g1 MSMg01no084_p22.g1 CHROMAT_FILE:
MSMg01no084_p22.g1 PHD_FILE: MSMg01no084_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:10 2005
         (634 letters)



>mm_chr16_69575317_69576356
          Length = 1040

 Score = 1172 bits (606), Expect = 0.0
 Identities = 630/640 (98%), Gaps = 6/640 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaaatgagaaatcataaggtaccattttgcaaagttattctatgtgaaacaaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tcttaaatgagaaatcataaggtaccattttgcaaagttattctatgtgaaacaaaataa 781

                                                                       
Query: 61  tgacttacaaagataaacaaaagcttaaagcatttatatttgttatttc--ttttttttt 118
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 780 tgacttacaaagataaacaaaagcttaaagcatttatatttgttatttcttttttttttt 721

                                                                       
Query: 119 acctgttatgctacagggagtctttcaaattcaaaggaaaaagcggtagaaaagactatc 178
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 720 acctggtatgctacagggagtttttcaaattcaaaggaaaaagcggtagaaaagactatc 661

                                                                       
Query: 179 aaggtatatatgacagtagaaagttgaaaacactctggtaatatcaatcataaaaccaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaggtatatatgacagtagaaagttgaaaacactctggtaatatcaatcataaaaccaaa 601

                                                                       
Query: 239 acactttaatactatactgaaggaatttgagtcatctttgctttggataacagaacttaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 acactttaatactatactgaaggaatttgagtcatctttgctttggataacagaacttaa 541

                                                                       
Query: 299 agggatatagcatcaaaataactaaaattataaaattatgttgaaaagcttattaaatat 358
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agggaaatagcatcaaaataactaaaattataaaattatgttgaaaagcttattaaatat 481

                                                                       
Query: 359 aacctatcatttcaaagaataaattataggacttaaaaagattcgagttacatagtggtg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aacctatcatttcaaagaataaattataggacttaaaaagattcgagttacatagtggtg 421

                                                                       
Query: 419 aagataaattatcaccttaaaacggattttgtaagtataaaatatatacataagtcccat 478
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagataaattatcaccttaaaaaggattttgtaagtataaaatatatacataagtcccat 361

                                                                       
Query: 479 gataaaagtatttataaaagatacatacaacaatgtgaaaatggattaaaacaaggtcaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gataaaagtatttataaaagatacatacaacaatgtgaaaatggattaaaacaaggtcaa 301

                                                                       
Query: 539 tatttatagtctgaatgaaggtagagagaatgggaga--gaga--caaaaatattatatg 594
           |||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||||
Sbjct: 300 tatttatagtctgaatgaaggtagagagaatgggagaaagagaaacaaaaatattatatg 241

                                                   
Query: 595 aaaatagttactgaaagtccaagatttactttttgctaag 634
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaaatagttactgaaagtccaagatttactttttgctaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1040
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1030
Effective search space:   642720
Effective search space used:   642720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)