BAC Information

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BAC

Clone NameMSMg01-087G09
Chromosome16 (Build37)
Map Location 50,635,245 - 50,635,736
singlet/doubletsinglet
Overlap genenone
Upstream geneIft57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54
Downstream geneLOC672778, 5330426P16Rik, EG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087G09.T7 (MSMg01no087_g09.b1)MSMg01-087G09.TJ (MSMg01no087_g09.g1)
ACCAG306439AG306440
length669694
length of high quality
(start - end)
364 (5 - 368)492 (56 - 547)
definitionCHROMAT_FILE: MSMg01no087_g09.b1 PHD_FILE: MSMg01no087_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:30 2005CHROMAT_FILE: MSMg01no087_g09.g1 PHD_FILE: MSMg01no087_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCTTTGTTTATCTCTGTACCCCATTTTTAATGGGGT
TATTTGAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGAT
ATTAGTCTCCTATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGT
TGGTGGCCTTTTTGTCTTCTTGACAGTGTCTTTTGCCTTACAGAAGCTTT
GCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAACACAAGCC
ATTGCTGTTCTGTTTAGGAATTTTTCTCCTGTGCCCATATCTTCGAGACT
TTCTCCCACTTTCTCCTCTATTAATTTCAGTGTCTCTGGCTTTATGTGGA
GGCATACTTGAAACTTATAACTTGAGTAAAATCTTATTGTACAACCTGAT
AAAGACACACACACGACATATGCTAATAATAAACACACATATTTAAAATA
TTTAATTACAGATGTGAGCTCTACATTGTTCCTGTGACTCTTGCTTCACG
CATGAGGTCAAGAGTGATATAGAGCTCATCTCTAAAATCTTCACTTCCGA
AAGCTTACTACCTTATTGATTACTCCCCTGCCCTTTGAAATCTGGTTGCG
CTTTATATCCACTCCCCTTTTTGCCCTCCTAAGCTTCATAACTCGCTTAT
GCCATGTTCGGTAACCCAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTGGTCTGGATAGAGCCAGGGATAATGATTGAGTCATGCTGATGT
ATCAGCTGTCTTCGGAGCATCACCAGGTCCTGTGTGTCTGCCTCTTGTAC
TCTAGTGCCTCTCTCAGAAGTAAGTGGCCAGGGGCATCAGTCCTGCAGCA
CACTGGGGCCAATTTCTCTCTTCCTTGCTGGAGCAAGGGTCAGGGTGCTG
AGGCATGTGCCGACCAACTCTCACATACCTGCCTGTTCCCCATGTGGTTC
AGGGAGTCCCTGACCAGCCAGAGAAAGCCTAGAGAAAGAGAGCTTCAGCA
TGCAGAAAACTCTCCTAATTCTTTCCTCTCACTGGAAGTAGTTTTGTGTG
CCAATTTTTACTGGTTCAATGAACAATTCCACAGTTGATCTAATAGCAGG
AGACAAAACATAAGACCTATGCTTCAACCACTTCATTTATTGAATATTTA
CACTGTGCCTGAGGAACGTGTAGTGCTGGCTAGCAAGTCCCAAATGGTGT
GTTATGAATTAGCCCACTTTCTCTCCAAATCCTTCTTTCCATCCATAATT
TGAAGTGAGTTGACTATTTTGAAAGTGTACTAAACTGAACTGACTGGGTT
GTGTCTCCCCCACCCTCATTGTGCTACTTTCAAGCGCTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_g09.g1 MSMg01no087_g09.g1 CHROMAT_FILE:
MSMg01no087_g09.g1 PHD_FILE: MSMg01no087_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:30 2005
         (492 letters)



>mm_chr16_50635045_50635936
          Length = 892

 Score =  913 bits (472), Expect = 0.0
 Identities = 487/492 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggtctggatagagccagggataatgattgagtcatgctgatgtatcagctgtcttcgg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggtctggatatagccagggataatgattgagtcatgctgatgtatcagctgtcttcgg 260

                                                                       
Query: 61  agcatcaccaggtcctgtgtgtctgcctcttgtactctagtgcctctctcagaagtaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 agcatcaccaggtcctgtgtgtctgcctcttgtactctagtgcctctgtcagaagtaagt 320

                                                                       
Query: 121 ggccaggggcatcagtcctgcagcacactggggccaatttctctcttccttgctggagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccaggggcatcagtcctgcagcacactggggccaatttctctcttccttgctggagca 380

                                                                       
Query: 181 agggtcagggtgctgaggcatgtgccgaccaactctcacatacctgcctgttccccatgt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggtcagggagctgaggcatgtgccgaccaactctcacatacctgcctgttccccatgt 440

                                                                       
Query: 241 ggttcagggagtccctgaccagccagagaaagcctagagaaagagagcttcagcatgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttcagggagtccctgaccagccagagaaagcctagagaaagagagcttcagcatgcag 500

                                                                       
Query: 301 aaaactctcctaattctttcctctcactggaagtagttttgtgtgccaatttttactggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaactctcctaattctttcctctcactggaagtagttttgtgtgccaatttttactggt 560

                                                                       
Query: 361 tcaatgaacaattccacagttgatctaatagcaggagacaaaacataagacctatgcttc 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagtgaacaattccacagttgatctaatagcaggagacaaaacataagacctatgcttc 620

                                                                       
Query: 421 aaccacttcatttattgaatatttacactgtgcctgaggaacgtgtagtgctggctagca 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 aaccacttcatttattgaatatttacactgtgcctgaggaacgggtagtgctggctagca 680

                       
Query: 481 agtcccaaatgg 492
           ||||||||||||
Sbjct: 681 agtcccaaatgg 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)