BAC Information

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BAC

Clone NameMSMg01-088E22
Chromosome16 (Build37)
Map Location 24,688,079 - 24,688,501
singlet/doubletsinglet
Overlap geneLpp
Upstream geneEG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088E22.T7 (MSMg01no088_e22.b1)MSMg01-088E22.TJ (MSMg01no088_e22.g1)
ACCAG307100AG307101
length778766
length of high quality
(start - end)
---423 (132 - 554)
definitionCHROMAT_FILE: MSMg01no088_e22.b1 PHD_FILE: MSMg01no088_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:44 2005CHROMAT_FILE: MSMg01no088_e22.g1 PHD_FILE: MSMg01no088_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCAAAATAGATCCGCGNAATTCCANTCT
CCCTGTGCTGATGCCAGCCCTCTGAGGAGTTCTTCTTCTGAACGGGAAGG
AGCGTGTCTCCGCAGGCGGGGACCCCGTAGGCTGAGGGGGGGGAAGGCGT
GGTGGGGGCCTGAGAAGCGAGCNCCTANNCNCCCCCCTCCNNCCCAAATG
CAATTTTCCAACGACTTGCCTTCTGAAAACCCGGGGGTTTTNANNTAAAA
ACTTTNNNAAACCCCCNNAAATTCCAAANNAAAATTTAAAAACCCCCAAC
CTCTTTAAAAAATTCCCCCCCTAAACTTTTTAAAAAAACTCAAAAAAAAA
AACCTTTCTACCCCCCACATAAAAATTCTTTTTTNCNTTTTAAAAAAAAA
ATTTTACTTTTTCCTTTNNNAAAAAACCCCCTTAAACACCCTTTTTATAT
AACTATTTAAAAANCAAAAACAACAAAAANNNACCCCCCACACAACNNCC
CCCCCCCCCCCCCCCCCCCCTTTTTCNNAAAAAAATCCCCNCATACACAC
CCCCGCCCNCTTCTCCTTTNTCCCNCCACCACCCNNCCCCCCCCNCCCCC
CCCNCCCCCANNNNCCACCCCCCCCATCCCCCCCCCACCCCCACCCNNCN
NCCACCCCCCACCTCCCCNCCCCNNCCCCCCCNNNCCCCCCCCCCNTCCN
NCCCNNTTCCCNCCTCCTCCCTACCCCTCCNNTCTTCTCNTCCTCCTCCT
ATTTCCCCTAATTTACCTATCTCTCTTG
NCCCCCCCTTTTTTTCNNNTTTTCCCCTNNNCCCCCCTCCTCCCTTTTAT
CCTTATTTCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGGCCTGAGGTATTAA
GTACAGTAATCAGGGTGGAGCTTTGTGGGGCCATGGGTAGTCTCTTCTCT
TGTGATCCCAAGTTCTAGCTTGCCAAAGCCAGGAGCAGCTGCAGGAGAGA
TTTATTAGTAATTAAAAGTTTAATATTTCATATTATTCACTTCAGCCTAA
ACATGCTGACTACTCGGAGTTGAGAGCTCCCGCATGCTCATACTGTATGA
GGAGCATGGAGTCTTGCAGACACAGGCTTTTACTTTGGAGACTTGTGATA
CGAACATGGTATTTTCTGTTGAAGCAGGGATTGGGATAGTACCATATCCA
TACTTCTTACATTTTCTTGTGAACCGTAGGGGAGCAGACCTTGATTTGAT
GAGAATTGATTTGTCTATATATCGACATGAAATTCTTTAGAAATGTTATG
TGGAAGATATTAGCTGAAATAAAATAAGATGTAAAAATAGCCCTGTAGAA
GAAAAATTGATGTACATTTTGCAGTGCCCATGTTTAGAGGATCTGGGTTA
TTTTGAACTAGTCTGTACCTGCCAGAAGACCTAGTTAAATAACAATGGAA
TGGGGGCGGACAAGCGTTTATCTGACTCAGATTTGCATGTTATGGGTTTG
ATGACGGGCATTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_e22.g1 MSMg01no088_e22.g1 CHROMAT_FILE:
MSMg01no088_e22.g1 PHD_FILE: MSMg01no088_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:44 2005
         (423 letters)



>mm_chr16_24687879_24688701
          Length = 823

 Score =  717 bits (371), Expect = 0.0
 Identities = 410/423 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggcctgaggtattaagtacagtaatcagggtggagctttgtggggccatgggtagt 60
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 201 atgtggcctgaggtattaagtacaataatcagggtggagctatgtggggccatgggtagt 260

                                                                       
Query: 61  ctcttctcttgtgatcccaagttctagcttgccaaagccaggagcagctgcaggagagat 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttctcttctgatcccaagttctagcttgccaaagccaggagcagctgcaggagagat 320

                                                                       
Query: 121 ttattagtaattaaaagtttaatatttcatattattcacttcagcctaaacatgctgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttattagtaattaaaagtttaatatttcatattattcacttcagcctaaacatgccgact 380

                                                                       
Query: 181 actcggagttgagagctcccgcatgctcatactgtatgaggagcatggagtcttgcagac 240
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 actgggagttgagagctcccgcatgcttatactgtatgaggagcatggagtcttgcagac 440

                                                                       
Query: 241 acaggcttttactttggagacttgtgatacgaacatggtattttctgttgaagcagggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaggcttttactttggagacttgtgatacgaacatggtattttctgttgaagcagggat 500

                                                                       
Query: 301 tgggatagtaccatatccatacttcttacattttcttgtgaaccgtaggggagcagacct 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 501 tgggatagtaccatatccatacttcttacattttcttgtgaaccataggggagcacacct 560

                                                                       
Query: 361 tgatttgatgagaattgatttgtctatatatcgacatgaaattctttagaaatgttatgt 420
           ||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct: 561 tgatttgttgagaatggatttgtctatatattgacatgaaatgctttagaaatgctatgt 620

              
Query: 421 gga 423
           |||
Sbjct: 621 gga 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)