BAC Information

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BAC

Clone NameMSMg01-088G22
Chromosome16 (Build37)
Map Location 42,746,626 - 42,746,856
singlet/doubletsinglet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20, LOC100043314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088G22.T7 (MSMg01no088_g22.b1)MSMg01-088G22.TJ (MSMg01no088_g22.g1)
ACCAG307189AG307190
length990702
length of high quality
(start - end)
---235 (106 - 340)
definitionCHROMAT_FILE: MSMg01no088_g22.b1 PHD_FILE: MSMg01no088_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:54 2005CHROMAT_FILE: MSMg01no088_g22.g1 PHD_FILE: MSMg01no088_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAAAAAAAANNNNNNNNNAACCNCCCNNNNNACAAACCCCNNCCCA
CCCCCCCACACACCCCCCANTAATACGAATAAGGAATGCAAACAAAACGC
ACAAAAACCCAATAGAATAACACCACCTAACACCCGCAAAAACACTTGAT
CACAAAAATCGCAAGAAAAAATAAAAATAACGAAAAAAAAAGATATCCGG
AATACCGTAGCGCTGAGAAAATTTAGCAACCGAAGAGCCCGGATTCCGCA
GAGTCATAGACGAACATACATCAACGTTTCACATTGCCATTGTAAAACCT
GATCATGTTCACCCTGTCTAATGATCCTACACCCATAACCACTCTCTTTT
GCGCATATGAGTGGACAGCTAATAGTCGTAACGGGTGTAGTTACGTGGCA
TAATCTACGCACCCTATCTTCCCGCTGCCCTTGTATACGTCGATCGGTAG
ACTTGCGAGGGTCTCGTACGTGTCGTCGCATGTTAAAGCAAATATTCAGT
GCGACGACATTGCGTGTTTTGGCACCTGTTTCTTGCGATTACGAACCCCT
AAGTGTTGTAATCGAGATGCGGAGAGCTAATTAGAAACCTAATTAGTATG
TGGCGGAATGTAACTATATAATAAATAATCAAATATATATATATTTTTTT
AGTTGCTTTATATATGATAGTTGCATCATTTAATGTCTATATATTGTCTA
GAAGTTAGCCGTGAGGCTGATCAATTTGACCATACAATGACTTGTTCGTG
TCCTGATTTGGCCTCGTCCGAGATCCTATAAGAATGGCNCNNNNNNTGGN
NNNNTCTAGTCNCATTACTTTGTACTTCNCTAGTACGTTCNNNNNAGNAT
GGATGGAGCNTGGATAGATTGCTCTGACCTGNNNCGCTGCCCGGTAGGGN
AGGTAGTAGTCAGCTCTNCTCATCATGCGGAGGAGAAGTAGATGTGGTAT
GAATAGCCCNTTCTAGCAGAGTAGGAGAGTATNCCCGAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGGGGTACGTGAATAAATAGTGTACTTCGGTGATAACATTTGTAAG
CCCAGTACTGTAAAAGCATATACATTCTGGTGGAAGAAGATGGGAGGTTT
CTTTTTGACTCACTGCGGCTGTATTTTAATCTAACTAAAATTCTGGCATG
CACAGGAAATCCCCAAAGCAAAGTGCCAGATGTCTTTTCAGGATCCTAGA
GACGTGGGATTCAGTGGGATTCGTTGCTAATAAGATGATTCCCCCCTTCC
ATTCTTCACACTCATCTGACACCCGAGCGACAGGGAGTTGATGTAATCAC
ACCACCCATCTAACAATGTCAACTGTGCTGACATCATCCTAGCTGCGCAG
GGCTGATGAGAATTTACAACATCAAACACCCTCCGAAGGTCAGCGACCAG
GTGTGACTCATTTCCCTGTATAACCCAGGTAGTAATAGAGAGGTCAGGAT
TACTTCACACTGACACACGATGCCTTTCAAACAGAGCTATTCTGACTAGC
TTTTCTGAGAACAGGAAAACATTCTTCTGTCTGTCTCCTCACTTCCCACC
GGAAGTACTTTATACTCCAGTTTACCCAGCTTGCTATGCATTATATTACT
TTGACATCCTAATGTATAAAAATAAACTTTCTCTGAATATGTATATATCT
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_g22.g1 MSMg01no088_g22.g1 CHROMAT_FILE:
MSMg01no088_g22.g1 PHD_FILE: MSMg01no088_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:54 2005
         (235 letters)



>mm_chr16_42746426_42747060
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgtaaaagcatatacattctggtggaagaagatgggaggtttctttttgactcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tactgtaaaagcatatacattctggtggaagaagatgggaggtttctttttgactcactg 372

                                                                       
Query: 61  cggctgtattttaatctaactaaaattctggcatgcacaggaaatccccaaagcaaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cggctgtattttaatctaactaaaattctggcatgcacaggaaatccccaaagcaaagtg 312

                                                                       
Query: 121 ccagatgtcttttcaggatcctagagacgtgggattcagtgggattcgttgctaataaga 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 311 ccagatgtcttttcaggatcctagagacatgggattcagtgggattcgttgctaagaaga 252

                                                              
Query: 181 tgattccccccttccattcttcacactcatctgacacccgagcgacaggga 231
           ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 251 tgattccccccttccattcttcacactgatctgacacccgagcgacaggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)