BAC Information

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BAC

Clone NameMSMg01-088I18
Chromosome16 (Build37)
Map Location 18,865,273 - 18,865,554
singlet/doubletsinglet
Overlap genenone
Upstream geneDgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik
Downstream geneMrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088I18.T7 (MSMg01no088_i18.b1)MSMg01-088I18.TJ (MSMg01no088_i18.g1)
ACCAG307273AG307274
length745778
length of high quality
(start - end)
368 (128 - 495)282 (125 - 406)
definitionCHROMAT_FILE: MSMg01no088_i18.b1 PHD_FILE: MSMg01no088_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:04 2005CHROMAT_FILE: MSMg01no088_i18.g1 PHD_FILE: MSMg01no088_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTC
TATCCCCNTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCAGGATTCCAGGGCTACACAGAGAAACCTTGTCTG
AAAAATCATATATATGTACATGCATATGTGTATGTATAGATACATGTATA
TTCAGTCCACCCCCCTTTCTTTCTTTTGACAGAATCTTATATAGTCTAGG
TCTACCTTGAACACATCTAGCTAAAAATGACCTTGAACTCAGGTCTTGTT
TCTACCTCTAAAGTGCTAAGAATATAGGCATGTATCACTCTGCCCTTCTA
AGGATCTGACTTTTTTTTTTTAAGCTACAATCATTTAATCTCTCTCTGTA
TGTGTGTGTAGAGGCACGTGTGTGACATGACTTGGGTGTGGAGGTCAAAG
GACAGCTTGTGGGAGTGTTTTCTCTTTCCACCACACCATGTACATGCTGG
GGCTTGAGCTCGGTCCATCAGACTTGAGGTAGGTAATAAAGTACCTTTAT
CCACTGGGTCATTTTGCTAACCTGTTTCAGATTTTTTTTTAAATGAATTT
CACCTCGGCTTATTTTAATGACTGAGACCTGCTCTCTTTTAAACTTCAGA
AGAACAAACAGAGTATTCACGAACCATATTTAAACGCGCCTTGCTTTTCA
AGCCGCCAACATTTGTTTTTATCAGAAATACGTGGAATTCCCACT
NNCCCCNNNNNNNNNNNNTTTCCCCATCCTCTNNTCCTCATTATACANCC
NCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGTTATACAGAGAA
ACCCTGTCTCAAAAAACAAACAACAACAAAAAAATACCAAACTGGTGCAG
TTGGTCCACCGAGTGTTCAGTAACCACTTGGAGGCCTACACTGATGTGAT
CAGAGGAATTAAAATGGAAAGTATTTCCCCCTTGTCTTCCAAGATCAACT
AAGTCCTGGAAAACTGTGTTACATCTCTCAAAATGTCCATAACTATGGAA
AACCACCTTTTCTCTTGTTCTATGTAGACCCCCGCTAAATAGACACTAAC
CAGTGTTCATTCTGAAAAGAAGAAAGCTAACAAAGAGGAATAAAAGTTCT
CCACACTCACATAGGACCAATAGGCAAAAGACAAATTACAGGCTCTAGAG
ATCCCCTTCTATGTGACCCCTGCGGACCAGATCTTCAACTGGCCCTGACA
GTAAAAATAATTAATTTTGGCACCTACATGTACGTTTCTTTAACAGCCCT
TATACATTACTTTACCCATATAAGGCATTTATTTGGACAACGGTTTCTCA
GTAATGATTCTCTTCCTGGTAACAAATTTCTTTTCAGAAGAGCATTTCTT
TACCCTGTAATAATGACCCCCTGTGTTCTTTGTTGCGCCCGCGGAAAGTT
TAATGTATCCCCCCTCCAATAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_i18.g1 MSMg01no088_i18.g1 CHROMAT_FILE:
MSMg01no088_i18.g1 PHD_FILE: MSMg01no088_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:04 2005
         (282 letters)



>mm_chr16_18865027_18865708
          Length = 682

 Score =  484 bits (250), Expect = e-141
 Identities = 274/282 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggttatacagagaaaccctgtctcaaaaaacaaacaacaacaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caggacagccagggttatacagagaaaccctgtctcaaaaaacaaacaacaacaaaaaaa 469

                                                                       
Query: 61  taccaaactggtgcagttggtccaccgagtgttcagtaaccacttggaggcctacactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 taccaaactggtgcagttggtccaccgagtgttcagtaaccacttggaggcctacactga 409

                                                                       
Query: 121 tgtgatcagaggaattaaaatggaaagtatttcccccttgtcttccaagatcaactaagt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgtggtcagaggaattaaaatggaaagtatttcccccttgtcttccaagatcaactaagt 349

                                                                       
Query: 181 cctggaaaactgtgttacatctctcaaaatgtccataactatggaaaaccaccttttctc 240
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cctggaaaactgtgggacatctctcaaaatgtccataactatggaaaaccaccttttctc 289

                                                     
Query: 241 ttgttctatgtagacccccgctaaatagacactaaccagtgt 282
           |||||||||| |||||| | || |||||||||||| ||||||
Sbjct: 288 ttgttctatggagaccctcactgaatagacactaagcagtgt 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)