BAC Information

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BAC

Clone NameMSMg01-088M04
Chromosome16 (Build37)
Map Location 14,389,940 - 14,390,301
singlet/doubletsinglet
Overlap geneAbcc1
Upstream geneMkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik
Downstream geneGm1758, Snai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088M04.T7 (MSMg01no088_m04.b1)MSMg01-088M04.TJ (MSMg01no088_m04.g1)
ACCAG307432AG307433
length772681
length of high quality
(start - end)
---362 (56 - 417)
definitionCHROMAT_FILE: MSMg01no088_m04.b1 PHD_FILE: MSMg01no088_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:21 2005CHROMAT_FILE: MSMg01no088_m04.g1 PHD_FILE: MSMg01no088_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTTTTANTTTATCATTTAANAAAATCAATAAACTACCTACCAAA
AAAAAAAAGCTTTCCGACGCTCCCACATACCGTCCTAATAAGCTATCCAA
AACAAGCATTTCTCTTATCCGTGCGCGCCACCCAGAATACGTACAGACCC
CTGCCACCTCGTGTGATAATATCATGCCGGCCGGGCGAACCGCACCCCTC
TCGAATACTATCCGTCTACTTCCTTTATTACAATACAAGTAGTTAAAATC
AAACTTAGGTCATATCAATCCCTATTTGTCGTTTTTCGTGTGCGGTTGTT
CGTTTCGGTACCCAACTTAACCGGACCCTTCCTTCCCCTCCCCGCCTATC
CCCCTCTCCTTTCCCCTCTATCCACCACTATTCCGGGAAAGAGATTATCT
AACACGTTTAACGAATTACGCCCTTACACGTCAGAACTTATTCATCCTGA
TATTGAAACTTTTCCAATACCCGTGTTAAACACACCTCATTATACGGAGG
CCCCCCCCCCTCTTCTAATCATCGCCGGACCGGCCTAAATACGGAACCTC
ACCAAATAACGAGCACCCGACAATCCGGCCGGGACATTATCAATGGACTG
GGTCGGCAATAGAAACAATTCGTTTGCCTTTACCTTGTCCAATTCCTTTT
CCGGAAAGGCGTTTTTGCGAGGGCGAGGGAAAGAACTAAGGCCCCCCCCT
TTTTCAGGGAAAACGGAAAATCCCTTAAATTATTTGTAAAAGCGGGGGAA
AAACCCCCCTTTCTAAAAGAGG
TGGCGGCCGCCTTTCTAACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTCTGAGAAAGCTTCCATCATCCCCAGTGCAAACATGGGGAAACT
GAGGAAATGGAAGTTAAAAGAGTTCACTCAAAGGTCCTGTGGCCTGAGTT
TTGAACTGTTTGGCTCCAAATTTTCACTCTTGATTAATTTCACACATTCA
TCTGCCTTCTTCACACAAGGCTAGCCTGTACTACACAAGTACCCAGAAGC
CCCACCCCACAGGGATACCAGGTGACTTACAGTTTTGGTTTTGTTGAGGT
GTGTCATCTGGATGTAGCCCCGGTCATGGCGAGAGAGATAGAAGAAGTAG
AGGGGGAAACAGGACCAGAGGTAGAAACAAGGCACCCATGTGAGGACCGT
GTTCTGAAAGCACTTGGTAAAGTCGGGGTTGCTGGTGTGCCATGTGACAT
TCCAGTCCTGGGAACACAAGCACAAGCAAAGGTCAACTGTCACACCATGA
AGGAACAGGGACTTACAGGATTCAAATCCTGCTGCTGTAGGTTCTAACAA
ATAGACCATGATTCCTTTATCCGGGGATCTCTCAACACAAGTATACAAAT
TTCAAAGAGCCAGTGGCCACAGAGCCTGAAGGCTAGTAACACAAGCCAAG
AAGAGGTGATCCTAGTGCAGCAGCAAGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_m04.g1 MSMg01no088_m04.g1 CHROMAT_FILE:
MSMg01no088_m04.g1 PHD_FILE: MSMg01no088_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:21 2005
         (362 letters)



>mm_chr16_14389740_14390501
          Length = 762

 Score =  692 bits (358), Expect = 0.0
 Identities = 361/362 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgagaaagcttccatcatccccagtgcaaacatggggaaactgaggaaatggaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctctgagaaagcttccatcatccccagtgcaaacatggggaaactgaggaaatggaagtt 503

                                                                       
Query: 61  aaaagagttcactcaaaggtcctgtggcctgagttttgaactgtttggctccaaattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaaagagttcactcaaaggtcctgtggcctgagttttgaactgtttggctccaaattttc 443

                                                                       
Query: 121 actcttgattaatttcacacattcatctgccttcttcacacaaggctagcctgtactaca 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 442 actcttgattaatttcacacatccatctgccttcttcacacaaggctagcctgtactaca 383

                                                                       
Query: 181 caagtacccagaagccccaccccacagggataccaggtgacttacagttttggttttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caagtacccagaagccccaccccacagggataccaggtgacttacagttttggttttgtt 323

                                                                       
Query: 241 gaggtgtgtcatctggatgtagccccggtcatggcgagagagatagaagaagtagagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaggtgtgtcatctggatgtagccccggtcatggcgagagagatagaagaagtagagggg 263

                                                                       
Query: 301 gaaacaggaccagaggtagaaacaaggcacccatgtgaggaccgtgttctgaaagcactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaaacaggaccagaggtagaaacaaggcacccatgtgaggaccgtgttctgaaagcactt 203

             
Query: 361 gg 362
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)