BAC Information

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BAC

Clone NameMSMg01-088P03
Chromosome16 (Build37)
Map Location 10,424,813 - 10,425,243
singlet/doubletsinglet
Overlap geneBC068110
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1
Downstream geneCiita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088P03.T7 (MSMg01no088_p03.b1)MSMg01-088P03.TJ (MSMg01no088_p03.g1)
ACCAG307571AG307572
length748709
length of high quality
(start - end)
254 (45 - 298)431 (74 - 504)
definitionCHROMAT_FILE: MSMg01no088_p03.b1 PHD_FILE: MSMg01no088_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:35 2005CHROMAT_FILE: MSMg01no088_p03.g1 PHD_FILE: MSMg01no088_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTTCTCTGCAAGAGCAACCAGTGTTCTTAACTGTGGAGCCATCT
CCACAGCCCCTCAAAAACAGAAAGTTAAGAAGGCTGGGGTTATAGCTCAG
TAGTAGAATGCTTGTCCGGTATATATGAAACAGCTCTGGGCTTCATACTC
AGTAACACACACACACACACACACACACACACACACACACACGAGGAAGG
GAGAAAGAAGGGAGGGGAGAGGGGAAAAGGAGAGGGAAAGAGAGAGGCCC
CCCCCCTCCCCTCCTCCGCTTTCTTTCTGGAGGTCGTATACGACCCACCA
TTGTCTTTCCTCCAATTCTCTCTCCTTTCTTTCCTTCTCCTTCATCTGTC
CTCCTTTGTTTCTGTACATCTCCCCCTCTATAAAACTATAATTCCGCCAC
CTTCCCCTTCTGTATTCTCAACTCTACAATATACACTTGTTTTAACGCCC
CCCACATATACCCCCTTTCTCCACGCAAATATCGATTCACTTCTATTTTC
CACTCCAACGCATTTTACCACTACTAACACTTACGATATATTATTAAGTC
TCTACATTTTTCGAATACCCCTCACTTTTTCTACTCTCCCTCTCTTCCTG
TGACCTCTTTAACCCTTTCTCTCTCCATCAAACCTGTTTTTTATATTTAA
TCCTCATTTCATCGATTTAAACTTTATCTATAAAAATATTTTAGCTTA
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTTGTCAGGTTTACACATCCAGTGC
TTTTACACACTGAGCCCTCTCCCTGGCCAGTTGTAGGCTTTGCTTTAATT
ACTTGATTTTATGTGTATGTTGCCTGCATGAATGTATATGTGTAGTGTGT
GATGACTGTGGAAGTCAGAAGAGGGTGTCGGAATCCTCTGGAACTGGAGT
TACAGATAGGTGGCTGAGCTGCTGTATGGGTGCTGGGAAACCGATCTGGG
TCCTCTGCGGGAGCAGCAAGGTTTCATAATTTTAGCCCCAGTCTTAAATA
TCACTTAAAACTAAACAGTAGTCACAAAATGTCAGACACTTTGTTGATAG
GAGCTGTCAATTTGTTACAGACAGAATGGTGGGTGCCATGGCGCTAGGGA
CAAATAGGGAGCTAGTGTCTAAAGGACGGTGCTCAGGCTGGAGAGATGGC
TCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTC
CTAGGAACCACATGGTGGCTCACAACCATCTGTAATAACCTGATGCCCTT
TTCTGGTGTGTCTAAAAACAGCTATGGTGTACTCATATACTTAAAATAAA
TAATTACCTCTTACAAAGACCAAAAATTATACTGATAGGATTGTTCTTCT
TTTTGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_p03.g1 MSMg01no088_p03.g1 CHROMAT_FILE:
MSMg01no088_p03.g1 PHD_FILE: MSMg01no088_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:35 2005
         (431 letters)



>mm_chr16_10424613_10425443
          Length = 831

 Score =  803 bits (415), Expect = 0.0
 Identities = 427/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttgtcaggtttacacatccagtgcttttacacactgagccctctccctggccagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggttgtcaggtttacacatccagtgcttttacacactgagccctctccctggccagttg 260

                                                                       
Query: 61  taggctttgctttaattacttgattttatgtgtatgttgcctgcatgaatgtatatgtgt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggttttgctttaattacttgattttatgtgtatgttgcctgcatgaatgtatatgtgt 320

                                                                       
Query: 121 agtgtgtgatgactgtggaagtcagaagagggtgtcggaatcctctggaactggagttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtgtgatgactgtggaagtcagaagagggtgtcggaatcctctggaactggagttac 380

                                                                       
Query: 181 agataggtggctgagctgctgtatgggtgctgggaaaccgatctgggtcctctgcgggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agataggtggctgagctgctgtatgggtgctgggaaaccgatctgggtcctctgcgggag 440

                                                                       
Query: 241 cagcaaggtttcataattttagccccagtcttaaatatcacttaaaactaaacagtagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcaaggtttcataattttagccccagtcttaaatatcacttaaaactaaacagtagtc 500

                                                                       
Query: 301 acaaaatgtcagacactttgttgataggagctgtcaatttgttacagacagaatggtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaaatgtcagacactttgttgataggagctgtcaatttgttacagacagaatggtggg 560

                                                                       
Query: 361 tgccatggcgctagggacaaatagggagctagtgtctaaaggacggtgctcaggctggag 420
           |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 561 tgccatggggctagggacaaatagggagctagtgtctaaaggactgtgctcgggctggag 620

                      
Query: 421 agatggctcag 431
           |||||||||||
Sbjct: 621 agatggctcag 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)