BAC Information

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BAC

Clone NameMSMg01-089D23
Chromosome16 (Build37)
Map Location 16,099,281 - 16,099,888
singlet/doubletsinglet
Overlap gene2310008H04Rik
Upstream geneLOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, LOC100043266
Downstream geneLOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089D23.T7 (MSMg01no089_d23.b1)MSMg01-089D23.TJ (MSMg01no089_d23.g1)
ACCAG307795AG307796
length707685
length of high quality
(start - end)
632 (39 - 670)609 (74 - 682)
definitionCHROMAT_FILE: MSMg01no089_d23.b1 PHD_FILE: MSMg01no089_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:59 2005CHROMAT_FILE: MSMg01no089_d23.g1 PHD_FILE: MSMg01no089_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:59 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTAAATTTGCGGCGCTATACGACTCCTATATCCAGAAATCCGCGGAATTC
TTTCTTCTACACTTGAAGATCTTATCATACAGATCTTTCACTTGCTTAGT
TAGAGACACACCAAGGTATTTTATATTATTTGTGACTATTGTGAAGGGTG
TTGTTTCCCTAATTTCTTTCTCAGCCTGTTAATCCTTTGTGTAGAGAAAG
GCCACTGATTTGTTTGAGTTAATTTTATATCCAGCTAGATTGCTGAAGTT
GTTTATCAGGTTTAGGAGTTCACTGGTGGAATTTTTGGGGTCACTTATGT
ATACTATCATATCATCTGTTAATAGTGATATTTTGACTTCTTCCTTTCCA
ATTTGTATCCCCTTGATCTCCTTTGTCATCTAATTGTTCTGGCTAGGACT
TCAAATACCATATTGAATAGGTAGGGAGAGAGTGGGCAGCCTTGTCTAGT
CCCTGATTTTAGTGGGATTGCGTCAAGTTTCTCTCCATTTAGTTTGATAT
TGACTACTGGTTTGCTGTATATTGCTTTTACTGATTATTGCTGTATATTG
TTTCTGTATGAGCCTTGAATTCCTGATCTTTCCAAGACTTTTATTATGAA
TGGGTGTTGGATCTTGTCAAATGCTTTCTCAGCATCTAATGAGATGATCA
TATGGGTTTTTTCTTTGAGTTTGTTTATATAGTGGATTATGTTGATGGAT
TTCCATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGCAATACTGAATGGCTGAG
AAGCACATGAAAAAAAATGTTCACCATCCTTAATCATCAGGGAAATACAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGCCAGAATGGCTGAGGT
AAAAAATTTAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGCACAACCACTCTGGAAA
TCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
CTCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGGTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAACCACTGCGG
AACTATGACACTGGAATGCAAAGGGCCCTTTATCCAAGACACCTGCCTCT
ATGAGTGTTCCCAGAACTTGAGACCCTGGATACAGTAGGTGGACTAGAAC
TGGTGCAAAGAGCGGATCCTTGATGTTCCCCTGTGAAAGAGGACTGTCAG
CAGTGGTGGGAGGACTGCCAGAGCTCTTTTACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_d23.g1 MSMg01no089_d23.g1 CHROMAT_FILE:
MSMg01no089_d23.g1 PHD_FILE: MSMg01no089_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:59 2005
         (609 letters)



>mm_chr16_16099080_16100088
          Length = 1009

 Score = 1054 bits (545), Expect = 0.0
 Identities = 593/609 (97%), Gaps = 1/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgagcaatactgaatggctgagaagcacatgaaaaaaaatgttcaccatccttaa 60
           ||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
Sbjct: 202 tcacctgagcaatactgaatggctgagaagcacctg-aaaaaaatgttcagcatccttca 260

                                                                       
Query: 61  tcatcagggaaatacaaatcaaaacaaccctgagattccacctcacaccagccagaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatcagggaaatacaaatcaaaacaaccctgagattccacctcacaccagccagaatgg 320

                                                                       
Query: 121 ctgaggtaaaaaatttaggtgacagcagatgctggcaaggatgtggagaaagaggaacac 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ctgaggtaaaaaattcaggtgacagcagatgctggcaaggatgtggagaaagaggaacgc 380

                                                                       
Query: 181 tcctccattgttggtgggattgcaagcttgcacaaccactctggaaatcagtctggcagt 240
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct: 381 tcctccattgttggtgggattgcaagcttgtataaccactctggaaatcagtctggcggt 440

                                                                       
Query: 241 tcctcagaaaattggacatagtactaccggaggatccctcaatacctctcctgggcatat 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tcctcagaaaattggacatagtactaccggaggatcccgcaatacctctcctgggcatat 500

                                                                       
Query: 301 atccagaagatgttccaactggtaagaaggacacatgctccactatgttcatagcagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccagaagatgttccaactggtaagaaggacacatgctccactatgttcatagcagcct 560

                                                                       
Query: 361 tatttataatagccagaaggtggaaagaacccagatgcccctcaacagaggaatggaacc 420
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 tatttataatagccagaagctggaaagaacccagatgtccctcaacagaggaatggaacc 620

                                                                       
Query: 421 actgcggaactatgacactggaatgcaaagggccctttatccaagacacctgcctctatg 480
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 actgcggaactatgacattggaatgcaaagggcactttatccaagacacctgcctctatg 680

                                                                       
Query: 481 agtgttcccagaacttgagaccctggatacagtaggtggactagaactggtgcaaagagc 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 agtgttcccagaacttgagaccctggatacagtaggtggaccagaactggtgcaaagagc 740

                                                                       
Query: 541 ggatccttgatgttcccctgtgaaagaggactgtcagcagtggtgggaggactgccagag 600
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggatccttgacgttcccctgtgaaagaggactgtcagcagtggtgggaggactgccagag 800

                    
Query: 601 ctcttttac 609
           |||||||||
Sbjct: 801 ctcttttac 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)