BAC Information

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BAC

Clone NameMSMg01-089J13
Chromosome16 (Build37)
Map Location 13,478,747 - 13,628,094
singlet/doubletdoublet
Overlap geneParn
Upstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2
Downstream geneLOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089J13.T7 (MSMg01no089_j13.b1)MSMg01-089J13.TJ (MSMg01no089_j13.g1)
ACCAG308054AG308055
length671699
length of high quality
(start - end)
192 (87 - 278)452 (78 - 529)
definitionCHROMAT_FILE: MSMg01no089_j13.b1 PHD_FILE: MSMg01no089_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:27 2005CHROMAT_FILE: MSMg01no089_j13.g1 PHD_FILE: MSMg01no089_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,627,904 - 13,628,094)(13,478,747 - 13,479,198)
sequence
ATGATCCGCGGAATTCTCCCAAACTTGATGGATCCTTTTATCTGGTGCAT
TATTTGAAGATAGACAGTATGTCAGTGACTGCACCTTGGAGATGCAATGA
AAATACATTTTGGGTCTCAGAAAACCTAAGAACTAGGCGTGCTGCCTAGA
TGAGAGCATACCTGTGTCCTCTGAGCTAAACAATGTCACTGAGGAAAGCC
TGTGTTGAGGCACTGTGTCCTCGGTCTTGTTACCCACATTGAGTTGCTGA
CCTGCAGTTTGCATTCTATGGGCTGTGTTCTAAGGCACTGATCACAGCAC
TAATGGTCCAGAAGTTGGTTATTTTTGTACCCCCCCAGCATTGCTTCCCT
TCTGGGTAATAGTCCAAGAATCCAATTACGATGTGAACTGGGTAGAGGGA
GGGAAACCAATACCCTGTGTGTAACTGTGTAATGGGATAATTGATCTGGG
GAATAATGATTTCAGCATGTGGTGTCTAGGGTCTTACTTAAGCACTACAT
TGTTAAAAGGCTTTCTTTCTTAGCAAGTGTCACGCCCAATATTTGCGATG
TAAGGAAATTAAAGAATTCTTACATAATAAAGCATATATGATTCCAGCCA
TTCCACCACTATTTTCCGCTCTTGCTTCTGACGAGACACTGGTCTTTTTT
GTAGTGGCAGGGTCGTGTTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGAGAGGTGGAGACCAGGGT
ATGAAGAGGTCAGGGCCAGCCTTCGCTGTGTAATGAGTTTGAGGCCAGCC
TAGGTTTTATTTGACTATGACATAACCCAAAAAATTAAAAATGGAACAGA
GAGAGAAAAAGGAGGCTGGGTGGGGAGCTGTCTTGTTGAGCTCGCCAGAC
CCAGGTGAAACACCCAACAAATATCAGCTGCTCTGAGCCTGCCTGCTTGC
AAACTGGGCAGCGCAGAGGGCACTGGAGTCTGGTCCAAGGTTACACAGGC
TGAGGGAGGTTGCCATGCCAGTCAAGTCCCCAACCAGAGGGATTAGCACT
GTGGAGAACAGAAACTGAGGCCACTGTGGAGTCTGTGACCCCAGGCACCG
TGAGTAAGTGGCTATAGGCAAACCAGCACAGGGAAATGTGTCTTCCCTCA
GAGGCAAATTAGGGATGGCATTTGCCTTTCAAAATCGTTCAGGCCAGTCT
GGTCGGAGGGCGACTGCCTAAGTTTCTCCTGGATGTGCTGGCTCTCCCCT
CCTCTTCCCAAGTAGAGTGTGCAGCCAGGCTTGCATTCGCCCACGGCAGC
AGCTCCTAGGCCTCAGTCACTCGGCGAGGTGAAGGACTAACTTTGAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_j13.b1 MSMg01no089_j13.b1 CHROMAT_FILE:
MSMg01no089_j13.b1 PHD_FILE: MSMg01no089_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:27 2005
         (192 letters)



>mm_chr16_13627704_13628295
          Length = 592

 Score =  346 bits (179), Expect = e-100
 Identities = 188/191 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagatgcaatgaaaatacattttgggtctcagaaaacctaagaactaggcgtgctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tggagatgcaatgaaaatacattttgggtctcagaaaacctaagaactaggcgtgctgcc 332

                                                                       
Query: 61  tagatgagagcatacctgtgtcctctgagctaaacaatgtcactgaggaaagcctgtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tagatgagagcatacctgtgtcctctgagctaaacaatgtcactgaggaaagcctgtgtt 272

                                                                       
Query: 121 gaggcactgtgtcctcggtcttgttacccacattgagttgctgacctgcagtttgcattc 180
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 271 gaggcactgtgtcctccgtcctgttacccacattgagttgctgacctgcagttagcattc 212

                      
Query: 181 tatgggctgtg 191
           |||||||||||
Sbjct: 211 tatgggctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no089_j13.g1 MSMg01no089_j13.g1 CHROMAT_FILE:
MSMg01no089_j13.g1 PHD_FILE: MSMg01no089_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:27 2005
         (452 letters)



>mm_chr16_13478547_13479398
          Length = 852

 Score =  843 bits (436), Expect = 0.0
 Identities = 448/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgagaggtggagaccagggtatgaagaggtcagggccagccttcgctgtgtaatgag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgagaggtggagaccagtgtatgaagaggtcagggccagccttcgctgtgtaatgag 260

                                                                       
Query: 61  tttgaggccagcctaggttttatttgactatgacataacccaaaaaattaaaaatggaac 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgaggccagcttaggttttatttgactatgacataacccaaaaaattaaaaatggaac 320

                                                                       
Query: 121 agagagagaaaaaggaggctgggtggggagctgtcttgttgagctcgccagacccaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagagagaaaaaggaggctgggtggggagctgtcttgttgagctcgccagacccaggtg 380

                                                                       
Query: 181 aaacacccaacaaatatcagctgctctgagcctgcctgcttgcaaactgggcagcgcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacacccaacaaatatcagctgctctgagcctgcctgcttgcaaactgggcagcgcaga 440

                                                                       
Query: 241 gggcactggagtctggtccaaggttacacaggctgagggaggttgccatgccagtcaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcactggagtctggtccaaggttacacaggctgagggaggttgccatgccagtcaagt 500

                                                                       
Query: 301 ccccaaccagagggattagcactgtggagaacagaaactgaggccactgtggagtctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccaaccagagggattagcactgtggagaacagaaactgaggccactgtggagtctgtg 560

                                                                       
Query: 361 accccaggcaccgtgagtaagtggctataggcaaaccagcacagggaaatgtgtcttccc 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccccaggcaccgtgagtaagtggctataggcaaaccagcacagggaaatgtgtcttccc 620

                                           
Query: 421 tcagaggcaaattagggatggcatttgccttt 452
           ||||||| ||||||||||||||||||||||||
Sbjct: 621 tcagaggtaaattagggatggcatttgccttt 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)