BAC Information

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BAC

Clone NameMSMg01-089L13
Chromosome16 (Build37)
Map Location 30,293,596 - 30,294,064
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15
Downstream geneGp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089L13.T7 (MSMg01no089_l13.b1)MSMg01-089L13.TJ (MSMg01no089_l13.g1)
ACCAG308145AG308146
length770678
length of high quality
(start - end)
311 (122 - 432)474 (59 - 532)
definitionCHROMAT_FILE: MSMg01no089_l13.b1 PHD_FILE: MSMg01no089_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:37 2005CHROMAT_FILE: MSMg01no089_l13.g1 PHD_FILE: MSMg01no089_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCCATTGNNNNTGAATCATXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCTATCCTCTGCTACA
TAGTAAGTTCCAGGTTAGCCTAGGCTACATGAGAACCTGTCTCAACCAAC
CAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAGACA
AAAAACTAGCTAGGACCAATGGTGATGGAAAACCTTGACACCTTGCACAG
GCATGAATAAAGAGAGAAAAGACAAAAACAGGGCTGGCGAGATGGCTCAG
CGGGTAAGAGCACCCACTGCTCTTCCGAAGGTCCTGAGTTCATATCCCAG
CAACCACATGGTGGATCACAACCATCTGTAATGTTATCTGACCGCCCTCC
TCCGGAGTGTCTGAAGACAGCTGCAGTGTACTTACATATAATTAATAAAT
AAGTGAATTTATTTAGAAAAAAAAAAGACAAGAATGATAACTCTGAACTC
TTTGCTTTTTTCTCTTTGGTGACCCTGAGTTCTGTCACTAGCTCCCCAGG
TTGTCTTGGACAAGCTTTCCTCCCTTCTTTCAGCCTCAGTTTCCCCACAA
GACCAATGAAGTGTTTTACATTTGGCATTCTCGCCTAAGACCGAGTTTCC
CAGCTTCACATGGGGTACCTTATAGTCCTGCCCCCATCCAGTCATGCGCA
CACCCAGGGTTACTTGGTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAGGAGCTCCCAACTCAAAACAGTCTTAGTTTTTCTATAAGC
CAGGCTTCTGGCTTCAGTGGAGGAGGAAAGGGTGGTCCAGGCAGCATAAT
AAGACGAAGGACACGAAAGGACCAGGTGGCTTCAGGGGGCTGAAAGGAAA
TGGGGCAGCTGTGAGCTCTGGAGCAAAAGAATGGGGTGGGGGACACCATA
GACAGGAGCAAAGCTGGAACTGGGGAAGGCTGTTGTGGGAGACAGCGAGC
TGGAACAGCTAACAGAATCCCAAGGCCCTTATACACCTGGCAGGTGACGA
TGGCATGGTGTCATTCATTTAATCCAACCCCCACTCCCTGGCCCATCTCT
CTAGAGCAGAGGTTCTCAACCTGTGGGTCTCGACCCCACTGGAGGGTCAC
ATATCTGATATTTACGTTACAATTTGTAATCGCAGTTTATGAAGTAGTCA
TGAAGTAATTTTATGGGTGTGTGTGTGTGTCGTCCGGAGGGCGTTAATTC
CACCCGCTTTTTCGCTCTCTTACATTGCCTAACCCCTAACTAATCCTATT
ACGCTCCTCATAATTTTCTTTTCTATCTCCCACCAACCCTTTTTCCTTCG
CTCCTACAATCTCCCCTTTCTACTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_l13.g1 MSMg01no089_l13.g1 CHROMAT_FILE:
MSMg01no089_l13.g1 PHD_FILE: MSMg01no089_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:38 2005
         (474 letters)



>mm_chr16_30293396_30294268
          Length = 873

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%), Gaps = 1/470 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagctcccaactcaaaacagtcttagtttttctataagccaggcttctggcttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggagctcccaactcaaaacagtcttagtttttctataagccaggcttctggcttcagt 260

                                                                       
Query: 61  ggaggaggaaagggtggtccaggcagcataataagacgaaggacacgaaaggaccaggtg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ggaggaggaaagggtggtccaggcagcataataagacaaaggacacgaaaggaccaggtg 320

                                                                       
Query: 121 gcttcagggggctgaaaggaaatggggcagctgtgagctctggagcaaaagaatggggtg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgcagggggctgaaaggaaatggggcagctgtgagctctggagcaaaagaatggggtg 380

                                                                       
Query: 181 ggggacaccatagacaggagcaaagctggaactggggaaggctgttgtgggagacagcga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggacaccatagacaggagcaaagctggaactggggaaggctgttgtgggagacagcga 440

                                                                       
Query: 241 gctggaacagctaacagaatcccaaggcccttatacacctggcaggtgacgatggcatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggaacagctaacagaatcccaaggcccttatacacctggcaggtgacgatggcatgg 500

                                                                       
Query: 301 tgtcattcatttaatccaacccccactccctggcccatctctctagagcagaggttctca 360
           |||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 501 tgtcattcattttatccaacccccaccccc-ggcccatctctctagagcagaggttctca 559

                                                                       
Query: 361 acctgtgggtctcgaccccactggagggtcacatatctgatatttacgttacaatttgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acctgtgggtctcgaccccactggagggtcacatatctgatatttacgttacaatttgta 619

                                                             
Query: 421 atcgcagtttatgaagtagtcatgaagtaattttatgggtgtgtgtgtgt 470
           ||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 620 atcacagtttatgaagtagccatgaagtaattttatgggtgtgtgtgtgt 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space:   400432
Effective search space used:   400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)