BAC Information

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BAC

Clone NameMSMg01-089P14
Chromosome16 (Build37)
Map Location 17,820,672 - 17,821,208
singlet/doubletsinglet
Overlap genenone
Upstream geneSpag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2
Downstream geneCar15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089P14.T7 (MSMg01no089_p14.b1)MSMg01-089P14.TJ (MSMg01no089_p14.g1)
ACCAG308328AG308329
length686686
length of high quality
(start - end)		573 (43 - 615)537 (76 - 612)
definitionCHROMAT_FILE: MSMg01no089_p14.b1 PHD_FILE: MSMg01no089_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:58 2005CHROMAT_FILE: MSMg01no089_p14.g1 PHD_FILE: MSMg01no089_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGAAATTTTGCTTTTGCTAATTATTTCTTTTTAATGATAAATATTATA
AGAATGTGATTTAGCTTTAATTCCAGATGTAGGAGGCTGGTTATGATTGC
CCTCATGCTCTAGTAGAAGGATGGTTTTGCCAGCTGTAGATCGTTTCTGT
GATTGTGTGGCATTTGGAACTCTGGGAACTTTTCAGAGGATATGAGTGGT
AGGTCCCCAAGAGGCCAGGAGGTGGCGTGTGTGGTTGTGGTCATTTAGGG
AGGTTGGTTGAGGTTTGTTAGTAGCTGTGGTTAAAGAAAAAAGAAAAGGA
AAGAAATTAGATTCATAGCTTCCCCCTGCCCCTTCTTTCTCTCCTAGCTA
GTGTTAGGGGAAGAAACTGGGGCTGGGTGGGTGTTGGGGTTCAGGAATTG
CCTCACAAACACATGAACACTGATCTCAATCAGACAGGCATAGTTTATTG
AGCATATCCCCCAGGACTGGTCGACCAAGGCCATGGTCCAGAGTCCAGAA
CTGAACCACAACCCTGAGTTAAGATCCTATAGGGTTTTTATACCCCATAT
CCAAAAACATTTGTGCCAAGTTATTTCATCAATGAGGGTTGATGGATAGG
GGATTCCTTAGGAAAATACCTTTGTTGTACAATTAA

NCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGGGCCATACAGGAAGCTAGCTA
TCACAGTAGAAGGCTGAGCACTGGGGGCCAACCCATGGTAATAATGCTGA
TGCTGGCTGTATAGACATGGTAGCTAAGCATGCCCCCAATTTAGTGGGAT
ACGGTGGGAATATTAGAGCTCTAGACCAAGTTCTGGCTGCCACCAAGCCC
TTTTGCAGCGACTGAGGGTAGACATTGGGAGGCTGTCACCTCTCCAGTCG
GATGGCAGTCCAGTCAGTCAGTTCCATCTTCCAGGGAACAACCAAGCCCA
TCCAATCTGAGTTCCGTTATGAGTGGTCTTCGCCAGGAGAGCAGAGTGAT
ATGGGAGGATACATGGGGCTCCAGCAGCAGGTGCAAAAGGCTAAGCTGCC
TACTCCTCCCAGGGATGCTTGGAGAGACATCTTGGAGCCACTGTCACTGC
AACTGGAGCAGAGGGATAGTTTCGCTCTGCCAGTAAATACCTATTTGCAG
AAACCTGAAGGAAAATATTCTGATGTGAAATTCTGTTCAGAAAACACCAG
TGAAAGCTGCACAAACTAAAGTTGCTTTCCTGCACCATGTAAGTCTACAA
TGTCCATATAAAATGACATCTATGCTGGGTGGTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_p14.g1 MSMg01no089_p14.g1 CHROMAT_FILE:
MSMg01no089_p14.g1 PHD_FILE: MSMg01no089_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:59 2005
         (537 letters)



>mm_chr16_17820472_17821408
          Length = 937

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagggccatacaggaagctagctatcacagtagaaggctgagcactgggggccaaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttagggccatacaggaagctagctatcacagtagaaggctgagcactgggggccaaccca 678

                                                                       
Query: 61  tggtaataatgctgatgctggctgtatagacatggtagctaagcatgcccccaatttagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 677 tggtaataatgctgatgctggctgtatagacatggtagctaagcatgcccccgatttagt 618

                                                                       
Query: 121 gggatacggtgggaatattagagctctagaccaagttctggctgccaccaagcccttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gggatacggtgggaatattagagctctagaccaagttctggctgccaccaagcccttttg 558

                                                                       
Query: 181 cagcgactgagggtagacattgggaggctgtcacctctccagtcggatggcagtccagtc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 cagcgactgagggtagacattgggaggctgccacctctccagtcggatggcagtccagtc 498

                                                                       
Query: 241 agtcagttccatcttccagggaacaaccaagcccatccaatctgagttccgttatgagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agtcagttccatcttccagggaacaaccaagcccatccaatctgagttccgttatgagtg 438

                                                                       
Query: 301 gtcttcgccaggagagcagagtgatatgggaggatacatggggctccagcagcaggtgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtcttcgccaggagagcagagtgatatgggaggatacatggggctccagcagcaggtgca 378

                                                                       
Query: 361 aaaggctaagctgcctactcctcccagggatgcttggagagacatcttggagccactgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaggctaagctgcctactcctcccagggatgcttggagagacatcttggagccactgtc 318

                                                                       
Query: 421 actgcaactggagcagagggatagtttcgctctgccagtaaatacctatttgcagaaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actgcaactggagcagagggatagtttcgctctgccagtaaatacctatttgcagaaacc 258

                                                                    
Query: 481 tgaaggaaaatattctgatgtgaaattctgttcagaaaacaccagtgaaagctgcac 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgaaggaaaatattctgatgtgaaattctgttcagaaaacaccagtgaaagctgcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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