BAC Information

Click to search

BAC

Clone NameMSMg01-090D13
Chromosome16 (Build37)
Map Location 62,903,176 - 62,903,341
singlet/doubletsinglet
Overlap genePros1
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19
Downstream geneEpha3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090D13.T7 (MSMg01no090_d13.b1)MSMg01-090D13.TJ (MSMg01no090_d13.g1)
ACCAG308510AG308511
length770754
length of high quality
(start - end)
95 (73 - 167)165 (78 - 242)
definitionCHROMAT_FILE: MSMg01no090_d13.b1 PHD_FILE: MSMg01no090_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:19 2005CHROMAT_FILE: MSMg01no090_d13.g1 PHD_FILE: MSMg01no090_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTAACTCTGTTATCAGATTATTTCCACTTCCAAAGAGCATTCTA
TTTACTCTATGTAGTTTGGTTACATAACGGATATGATATAATTCTTTCCC
TCTTTATTTTATGAGATTGTTAAAACGTCTCTGTGAATAAAGAAATATTA
TATGACTATTATTCTGTATATTTTAGAAGTCGACATGATGCTCCTCTTTT
TAATGATATGAGTTTATATTTGAATAACTTTATTTGTATTCCCGCTACTT
CCTTGATTATGTAAAAGAAGAATTTTTTTTAGACTGCGATGTACTTCCAG
CAACCAAGATTCTCTTTTTATTTCCCCCCCCCCCCCCCAGAGAAAGAACT
GCGCCAGATGTCCATCTCACCCACTGACGTAAAAACAAAAATTCCCCGAC
TGCAACTCCCCAGCCCCCTCATAACCACCCTCCTCTCGAACCCATTCTCC
TAAGGTTACCATCTAATATATACCGTTCTTATCTTCAAGTAATATCTTTT
GAATCTTCTATCATTGCTACTCATGATCTGATTTTATATCTTCTTTATCA
TTTACTCTCGTTCTAATCACCCATACTTCTTATCAAACCTAATTATAAAC
TATAAGGATACATTTATACTGCGCTCTTATCTCACACCTTAATCTACTTA
TTCATCTATTATTTATATCAAACTTTAATTAATACTTATTCCATACATTG
TCTCTTACATTTTCATATCG
ATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTCAAATCATATTTATGGAACTAAAACATG
GTGAAAAATTTATTACTGTGCTCTTCCAAGACTGTTGATATAAACATCAA
ATATGATTTAGAAACCAAATAAGCATTTATTTGATATTGGAAAATGTTAA
CGTTGATTTTATTCATAGATTTGGATGAATGCGCTCTAAAGCCAAGTGTC
TGTGGCACAGCTGTGTGCAAGAACATTCCAGGAAACTTCAAATGCGAACG
CCCCGACGCCTACCGATATGATCCCTCGTACAAATCTCGACAAGGAAGAT
CGATTATTTTTTTTCCCCCCCCGCCCCCCACATGTAGAATTTAAATCCCT
TGTCATAAGCATACTATATAAAAAAAAAAATAACTCCTGATGCGAGTCGG
TTTATTACGCGAATACAGTTTTTCTTACACATTCACAATCACCTAAAATC
ATTCATGTTTTTTTTGGACCTATAAATATCACTTACCCATTTTATCTAAA
TAGGCTTCCACCATCCATCTTATTTAACTATTAATCTCCCGTTTATATAT
CATCATCATGCACTACCTCTTTTATAATTATCATTAATAATATTTTTATC
TCTATAATTAATAATATGAATTTATTATATCTCTTATTATCATTGTAATA
TAAAAACCACCCCTCCTCATAACCACCAAATGATAATATTCAACCACTCT
TTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_d13.g1 MSMg01no090_d13.g1 CHROMAT_FILE:
MSMg01no090_d13.g1 PHD_FILE: MSMg01no090_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:19 2005
         (165 letters)



>mm_chr16_62902976_62903541
          Length = 566

 Score =  313 bits (162), Expect = 3e-90
 Identities = 165/166 (99%), Gaps = 1/166 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatttatggaactaaaacatggtgaaaaa-tttattactgtgctcttccaagactgtt 59
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 catatttatggaactaaaacatggtgaaaaaatttattactgtgctcttccaagactgtt 260

                                                                       
Query: 60  gatataaacatcaaatatgatttagaaaccaaataagcatttatttgatattggaaaatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatataaacatcaaatatgatttagaaaccaaataagcatttatttgatattggaaaatg 320

                                                         
Query: 120 ttaacgttgattttattcatagatttggatgaatgcgctctaaagc 165
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaacgttgattttattcatagatttggatgaatgcgctctaaagc 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 566
Length adjustment: 8
Effective length of query: 157
Effective length of database: 558
Effective search space:    87606
Effective search space used:    87606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)