BAC Information

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BAC

Clone NameMSMg01-090E04
Chromosome16 (Build37)
Map Location 57,805,044 - 57,805,261
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480
Downstream geneLOC629342, LOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090E04.T7 (MSMg01no090_e04.b1)MSMg01-090E04.TJ (MSMg01no090_e04.g1)
ACCAG308539AG308540
length734775
length of high quality
(start - end)
378 (66 - 443)219 (69 - 287)
definitionCHROMAT_FILE: MSMg01no090_e04.b1 PHD_FILE: MSMg01no090_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:22 2005CHROMAT_FILE: MSMg01no090_e04.g1 PHD_FILE: MSMg01no090_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AAAGCCATACCAGGAATCACTAACAACTCAAGTGATGTTAGAGTCCAGTG
AAGCATGCCAAGCCGCCTCAGGGTGTTAGCATGGATGTGCTTTAGAAGAA
TTGTCAGAGAGGCTTCATCTAGCAACTGATGGAAACAGATGTGAAGAACC
ACAGCCAAGCATTAGGTGGAGCTGAGGAATCCTGGGGAAGAGGCTAAGGA
AGATGCAAGAAAGTGAAGAGAACCACAATTCATGCCCCACAATCAACTAA
CCTGGGCTCATAGGGGCTCACGGAGACTAACCTGGGCTCATAGGGGCTCA
CGGAGACTAACCTGGGCTCATAGGGGCTCACAGAGACTAACCTGGGCTCA
TAGGGGCTCACGGAGACTAACCTGGCAATCAGGGTGCGTGCACGGGACAC
ACCTAAGCCATCTGCATATATGCTATGGCTGGGTAGCTTGGTCTTCTTGT
GGGACTCCGAATAGTTGGAGCAGAGACTGTTTCTTCTGTCTCTTTTGCCT
GAATTTGGGGACACGGAATTGCCTTTTCTGGCCTCACAAAGAGGAAGATG
TCCCCAGTTTTACTGAAACTACTAAACCCTGTGTTGGTCGGTTGGGCTCG
GATAACCGGCTTCCTTCTCGAATCTTTTTGATACTGTATCGTTTGCTCCC
GGTTGTAACGGTACTTTGTTTTCTCTTCTTTTTC
GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAGCATCCAATGAGCTCAGAAATTAAAGATGC
CCTGGAGCACTTCAGCTTGATATTAAGCACAAGCCAGCAAAGACGTAGTT
TCTACTGTTTGTAGACTCGTTTTCTGCTTCATTTTACTTGTGGTCTCTAG
AGACTGAGCACTGGATTTAGAGTACCTAGAACAGCGCACACGCACCAGTG
ACCACTGACTTACACTTTATAACATTGAGCAGGTTTTCTTCCTCATCTCC
AAGTTCTTTCACTTCAACCCCTTCTCACTACACTCAAATACACACTACCT
CCTCATCACCACATACATAACTTAATTTTTTATATAAAATAACTCCCCCC
CTACCCCTTTATCCCACACCCCTCCCTTTTTCTACACACTCTCAATCTAT
TATAACTATAAATATTAAATTATTAATATAATTCATTACTTTTCCTTCTT
TTCTATCACCTTATCCCCTCTCAACCCTCATATTCCCTTTCCCTCTCTTT
CTTACTCTATTCTTTTTTTCATTTATTACCACATTATTACCACCTTCTCT
ACTTATTCTTACTTACATAACTTATATTATCTCTACTTCCGTTCCCACCA
CCTAACACCTAATTACCCTTATTATTTTCAAAATTTGCCCTCATTATAAT
TTCTAGCCGAAATACCCACCTAATTTTAACATATATTCACATCCTCCAGC
AACTCCCCTATTATTCTATCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_e04.g1 MSMg01no090_e04.g1 CHROMAT_FILE:
MSMg01no090_e04.g1 PHD_FILE: MSMg01no090_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:22 2005
         (219 letters)



>mm_chr16_57804844_57805462
          Length = 619

 Score =  422 bits (218), Expect = e-122
 Identities = 218/218 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcatccaatgagctcagaaattaaagatgccctggagcacttcagcttgatattaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cagcatccaatgagctcagaaattaaagatgccctggagcacttcagcttgatattaagc 359

                                                                       
Query: 61  acaagccagcaaagacgtagtttctactgtttgtagactcgttttctgcttcattttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 acaagccagcaaagacgtagtttctactgtttgtagactcgttttctgcttcattttact 299

                                                                       
Query: 121 tgtggtctctagagactgagcactggatttagagtacctagaacagcgcacacgcaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgtggtctctagagactgagcactggatttagagtacctagaacagcgcacacgcaccag 239

                                                 
Query: 181 tgaccactgacttacactttataacattgagcaggttt 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tgaccactgacttacactttataacattgagcaggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)