BAC Information

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BAC

Clone NameMSMg01-090N02
Chromosome16 (Build37)
Map Location 19,979,081 - 19,979,466
singlet/doubletsinglet
Overlap geneKlhl6
Upstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
Downstream geneLOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090N02.T7 (MSMg01no090_n02.b1)MSMg01-090N02.TJ (MSMg01no090_n02.g1)
ACCAG308941AG308942
length715692
length of high quality
(start - end)
384 (65 - 448)295 (78 - 372)
definitionCHROMAT_FILE: MSMg01no090_n02.b1 PHD_FILE: MSMg01no090_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:06 2005CHROMAT_FILE: MSMg01no090_n02.g1 PHD_FILE: MSMg01no090_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATAAGGTCCGCTTTAGCACATCACTAAATCATAGGAAGACTGGAAT
GAGGCAGAGACCAGGGAAGGCAGAATCCCAGGCCTTCAGGATGCCACCTC
TTTCTCTCTCTACCTCTCCCCTGGCTGTACCTCCTGTTGGACTTCTCAAT
TCAGACTTCTGCCACATGGTTGAAGTTTGCTTTTTAATAGACCCGAGACT
CATTTCTTGCAGCTTTGACTGCAGAGGAAACTAAGGGATTTTCTCTGCTT
TTGGTTTAAAAACACCTGCGAAAGATGCTGATTGGCCTAGACTTCAATTA
CCATTCCTAGACCAATAATTGCATCAAGGAGTTAGGACACAATGATCAAC
TTAATTTAGGATCTTGGCCAAAGAGATAGGGGTGTGTGTGTGTGTGTGTC
CCACCTTTTTCTTNTTCTTCCTTTTCCCCTTTTTCTCCCCTCTTATATTT
TTACATACCCTCTTCTTACCTCCCCATAACAATACTCCTTCTTTCTCCAT
TTTCTCACCTTCCACTCCTTTATCTTTCTCCCCCCTTTCCCTCCTTTACA
CTACCCCTCCCTTCCCTCCATTTCACTCTTTTCTCTTTCTCTCTTATCTT
CCTCATTTTTTTCCTCTATCATTTTCCTTCTCTCCTTACCCCTTTATCCC
CCTTTTCCCTTCCCC
NATCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAGTTAGGGTTACATTGGTG
TGAGGAAACACTATGTCCAAAGCAACTTGTGGAGGAAAGGTTTTGTTTGG
CTTACGTGTTCACATCACTATTTATCACTGAAGAAAGTCAAGCCAGGAAC
TCAAACAGGGGAGACCTGGAGGAAGGAGCTAATGTAGAGGCCATGGAGGA
AGAGGGCTTCTGCTTACTGGCTTGCTCTCCATAGCTTGCTCAGCCTGCCT
TCTTATAGGAGCCAAGACCACCAATCCACAGATGGCACCATCCACAATGG
GCTGGGCCTTCCCTATTAATCACTAATTAAGACAATTCCTACAAGCCTGT
CTGCTTACAACCTAATCTTCTGTAGGCACTTTCTCAATCTAGGTACCTTC
CTCTCAAGTAAGTATAGCTTGTGTCAAGTTGGCATAAAACATCTCTGGGT
ATATGCCCAGGAGTGGTATAGCTGGTCCCTCAGGTAGTACTATGTCCAAT
TTTCTGAGGAACTGCCAGACTGATTTTCCGAGTGGTTGTACCAGTTTTGC
AGTCCCAGCAGCAATGGAAAAATGTTCCTCCTTTCTCCACTTCCTCTCCA
GCATCTGCTTATCCCCTGAGGTTTTGAACTTTACCATTCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_n02.b1 MSMg01no090_n02.b1 CHROMAT_FILE:
MSMg01no090_n02.b1 PHD_FILE: MSMg01no090_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:06 2005
         (384 letters)



>mm_chr16_19978881_19979666
          Length = 786

 Score =  696 bits (360), Expect = 0.0
 Identities = 379/388 (97%), Gaps = 6/388 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttagcacatcactaaatcataggaagactggaatgaggcagagaccagggaaggcaga 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 586 ctttagcacattactaaatcataggaagactggaatgaggcagagaccaggaaaggcaga 527

                                                                       
Query: 61  atcccaggccttcaggatgccacctctttctctctctacctctcccctggctgtacctcc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 attccaggccttcaggatgccacctctttctctctctacctctcccctggctgtacctcc 467

                                                                       
Query: 121 tgttggacttctcaattcagacttctgccacatggttgaagtttgctttttaatagaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgttggacttctcaattcagacttctgccacatggttgaagtttgctttttaatagaccc 407

                                                                       
Query: 181 gagactcatttcttgcagctttgactgcagaggaaactaagggattttctctgcttttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagactcatttcttgcagctttgactgcagaggaaactaagggattttctctgcttttgg 347

                                                                       
Query: 241 tttaaaaacacctgcgaaagatgctgattggcctagacttcaattaccattcctagacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttaaaaacacctgcgaaagatgctgattggcctagacttcaattaccattcctagacca 287

                                                                       
Query: 301 ataattgcatcaaggagttaggacacaatgatcaa----cttaatttaggatcttggcca 356
           |||||||||||||||||||||||||||||||||||    |  ||||||||||||||||||
Sbjct: 286 ataattgcatcaaggagttaggacacaatgatcaatggcc--aatttaggatcttggcca 229

                                       
Query: 357 aagagataggggtgtgtgtgtgtgtgtg 384
           ||||||||||||||||||||||||||||
Sbjct: 228 aagagataggggtgtgtgtgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 786
Length adjustment: 9
Effective length of query: 375
Effective length of database: 777
Effective search space:   291375
Effective search space used:   291375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)