BAC Information

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BAC

Clone NameMSMg01-090N11
Chromosome16 (Build37)
Map Location 75,446,448 - 75,446,613
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090N11.T7 (MSMg01no090_n11.b1)MSMg01-090N11.TJ (MSMg01no090_n11.g1)
ACCAG308956AG308957
length755759
length of high quality
(start - end)
168 (40 - 207)210 (72 - 281)
definitionCHROMAT_FILE: MSMg01no090_n11.b1 PHD_FILE: MSMg01no090_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:08 2005CHROMAT_FILE: MSMg01no090_n11.g1 PHD_FILE: MSMg01no090_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAATTTGCGGCGCTAAACGACTCCTATATCCAGAGATCCGCGGAATTCC
TAAAAATCTCTTAATCCTTTCCCGGAGACCTTCACAGGATGATAAATCGC
CTTCCTTTTCATGTGAACTCACCACTCTTCTTGTAGCCAAAGATTTCCAA
AGTGAGGAGAAATGCATTCTCCGTAAGTCATCCTCTTCAAAGTTATGTTT
TCAACTCCTCCCTAAGCCCCCCTCAAAAAAAAAAAAAGGTACCAATTTTT
GGAACAGAGAATATGAAGAGGATATGGAGAGAATCACTATGGCCCCTTAT
GCTAAATTGCCATCACTTGTTTTATCTATCTAGAAAGACTGAAAATCCCT
TAAATGAGATTATATATAGTACCCAATGGATAAGGAATGGAAAAAGAGAC
CCCAGGCCCCTCAACCAAAATGGATAATAATCAAACTATCTGGGCGCAGA
GGTAGTTCACACTCCCCCCGCTTGCTTCCCCCCCCCACTCCTTTTTTTCC
ACTTTTTTTCTTCTATCTATACTTTTAATCATGACCGACAACTTGTTCCT
GTTTCACTTTTTTTTTTCAGTTATTAAAGGCTGTGTCTCAAATCTTTGTC
TTTTTTATCTATTATATTTTATTTTATGAATTCTTCATATAATCACTATC
TTCAACAAATCTTTTTCAAATTTTTTTTTTATTTCTTTTTTTTCATTTAT
TTTTTTATATCCTTCACAGTTCGATATTTATTCCACGTATCTTCCTTTAT
TTACT
ATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTACCCAATTTTTAAATTGCTTTTTGGG
TTTGTTGCTGTCTAGTTTCTTGAGTTATTTATATATTTTGCATATCAACC
CTCTGTCAGATCTGGAGTTGGTAAAAAATATTTTCCCATTCTATAAACTG
CCATTTTGTCCCTTTGAAAGTGTCCTTGCCTTATAGGAACTTTTCAGTTT
CATGAGGTTCAATTTATTAATTGTTGATTTTGAAAACACAATTCATATAT
AAAATTTCAATATTATATCTTTAATATTATAACATTATTAAAAATATTAA
TATTTTTGTTTTTGCAACAAACCCTAAAGCTTTGCAAAACTACATCGCAT
TTGTGCTTTGAACACGCATAAGTGTAGCTGTGACTGGTTCAAATTTTTCC
TTTTCCTCATATTATAGATATAACATTATATGATCATGTCATATGTGTTC
ATTTTGTACCTAAACTGCTATCTCTTATCATGTACGATCTATCCATTAAT
AATAGTTATATTAAAAAAGCATTACTATTTCTTAATTCTCCCACCACTTT
AAAATAATTGATCTTTCATATCTCGGTATCCTTATTAAAATAATTTATAA
TTAAAAAATTAAATAATATACTTAGGCATATAATAATTAATATTTCTACT
AAATATAATTACCCCAGACTCTATAAACGATAATCTATTTTTGCCGAAAA
CCCAAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_n11.b1 MSMg01no090_n11.b1 CHROMAT_FILE:
MSMg01no090_n11.b1 PHD_FILE: MSMg01no090_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:08 2005
         (168 letters)



>mm_chr16_75446245_75446813
          Length = 569

 Score =  275 bits (142), Expect = 1e-78
 Identities = 160/166 (96%), Gaps = 1/166 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaaaaatctc-ttaatcctttcccggagaccttcacaggatgataaatcgcc 62
           ||||||||| |||| | | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgaaaaccccattaatcctttctcggagaccttcacaggatgataaatcgcc 263

                                                                       
Query: 63  ttccttttcatgtgaactcaccactcttcttgtagccaaagatttccaaagtgaggagaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttccttttcatgtgaactcaccactcttcttgtagccaaagatttccaaagtgaggagaa 323

                                                         
Query: 123 atgcattctccgtaagtcatcctcttcaaagttatgttttcaactc 168
           | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagcattctccgtaagtcatcctcttcaaagttatgttttcaactc 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 569
Length adjustment: 8
Effective length of query: 160
Effective length of database: 561
Effective search space:    89760
Effective search space used:    89760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)