BAC Information

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BAC

Clone NameMSMg01-091B23
Chromosome16 (Build37)
Map Location 60,367,477 - 60,367,684
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneGabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170, LOC100043524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091B23.T7 (MSMg01no091_b23.b1)MSMg01-091B23.TJ (MSMg01no091_b23.g1)
ACCAG309164AG309165
length716719
length of high quality
(start - end)
218 (42 - 259)346 (73 - 418)
definitionCHROMAT_FILE: MSMg01no091_b23.b1 PHD_FILE: MSMg01no091_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:31 2005CHROMAT_FILE: MSMg01no091_b23.g1 PHD_FILE: MSMg01no091_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACTTAGCTAACTCAATTACAATTATTATTTTTGTCCACTGTATTTTCA
AAATAAATATCTAAAATGTACTAAGTATAAAACCAAACTTCCTTGTTCTA
AGGTCTCTTATACAGATTTTCTCTACACATCTTTTTTTTTTTTTTTTTTT
TTTTTTGGCTTTACACAGAAAGACACCAACGCCATCTATCCGGCCGGCAC
TTAATGGTTGATAGGCTCAGCATTCCAACTGAGTTGCCATGGTAAGCTTC
TTAGGAGAGGGCCCATGGGGTTTTACAATCTGGTTTCCTCTGCCTACTTC
TCCAGTGGACCACAGCTTACAGCAACATGTCTCCATCCATTATGCCTTGG
CTTATAAATGTGTGCATGGAATAACTCTACTCTTGGGGCACTTCCTTGGT
TTACTTCATCTTGGGAGGGTCTATTTATTCTATAATATTCGATGAAATAT
TCCTGATCCAACTAGGCTGAAATTGCTCAAGTACCCCTCTATGTTCCCTG
AGCATTTTTCTCAAGTCACAATTTAAAGCATTTTAACGAATATAATTACT
TTCTCTTTAATCAAACCTCTGAGAAAAAAATATGAAATTAAGTTTTGATG
AAGTAGTCTCTACATAGCAAATATGGTGCATTTTGCTTTTATATGCCAGA
ATGGATTTAAAATTCC
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAGA
AGCACCTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACAACAGTCAGAATGGCTAAGATCAA
AAATTCAGTTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACAC
CACTCCATTGTTGGTGGGATTGCAAGCTTGTACAAAAACTCTGGAAATCA
GTCTGGTGTTTCCTCAGAAAATTGTACATAGTACTACTGGAGGATCCTGC
AATACCTCTACTGGGCATATATCCAGAACATGTCCCAACCGGTGAGAAGG
ACACATGCTCCACTATGTTCATAGAAGCATTATTTATAATAACCAGAATC
TGGAAAGAACCCAGAGGTCCCTCAACAGAGGAATGGATTCCGACAATGTG
GCACATTTACACAATGGACTACTACTCACCTATTTAAAAGAATGAATTCA
TGAAATCCCTAGGCCGATGCATGTACCTACAGGGCATCTTCCTGAGTGAG
GTACCCCAATCTCAAACGAACCTCCACCATATATACCCACTGCCAAGTGC
ATATTAACTCCCAAACCTTGGACACCCAAGATATCCCATCCATTCTGCTA
AAAACCTGACACCCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_b23.b1 MSMg01no091_b23.b1 CHROMAT_FILE:
MSMg01no091_b23.b1 PHD_FILE: MSMg01no091_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:31 2005
         (218 letters)



>mm_chr16_60367346_60367963
          Length = 618

 Score =  362 bits (187), Expect = e-104
 Identities = 204/211 (96%), Gaps = 3/211 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacttagctaactcaattacaattattatttttgtccactgtattttcaaaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaattctacttagctaactcaattacaattattatttttgtccactgtattttcaaaata 280

                                                                       
Query: 65  aatatctaaaatgtactaagtataaaaccaaacttccttgttctaaggtctcttatacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aatatctaaaatgtactaagtataaaaccaaacttccttgttctaaggtctcttatacag 220

                                                                       
Query: 125 attttctctacacatctttttttttttttttttttttttttggctttacacagaaagaca 184
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 attttctctacacat---tttttttttttttttttttttttggctttacacagaaagaca 163

                                          
Query: 185 ccaacgccatctatccggccggcacttaatg 215
           ||||| ||||||||||  ||| |||||||||
Sbjct: 162 ccaacaccatctatccatccgtcacttaatg 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)