BAC Information

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BAC

Clone NameMSMg01-092N04
Chromosome16 (Build37)
Map Location 72,774,100 - 72,774,563
singlet/doubletsinglet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092N04.T7 (MSMg01no092_n04.b1)MSMg01-092N04.TJ (MSMg01no092_n04.g1)
ACCAG310419AG310420
length664712
length of high quality
(start - end)
472 (17 - 488)194 (55 - 248)
definitionCHROMAT_FILE: MSMg01no092_n04.b1 PHD_FILE: MSMg01no092_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:48 2005CHROMAT_FILE: MSMg01no092_n04.g1 PHD_FILE: MSMg01no092_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTCGGAGAGGATCCGCGGAATTCCAGTTGTGACTGATTTCCAGC
TAGAGCTGATTCAGCCAGTGGGGAGCCTGCATGCTGAGAATCTCAGCTCT
GCCAAACACTCTTTAACTTTCCTTGGGCATGTTCTAGTTATATAACACCA
TGAAAAAATAATCTTTGTGAAATTGGGAAGGCTTGTATTAGGAGCAATGG
CTATACTTACTTCTGTTGAACAAACCATTGCAAAGACGTTTGTCAGCTTT
CTCAGGGAGGGCGTTTTCTGAAGCTGTTTGATTTGCCTGCCATTTTTTTT
TGTTTTGTTTTTTGTTTTTTTCTCATTTATCTTCTATCATAATATTTTCA
TCCCGTAATGTTGGATTTTTATCAACTCTCTCCAGGACGTGATATTTCAG
ATTATCATGTGACCCCTTTAAGAGTCACATCAGTATTGGGACCAGTGGGA
TGGAAAACAGAAAATCATTTTCTTGTTTTGCTGTGGTTCCTCTAAGATGC
CAGTCTTTACGTGGGTGGGTTGTCTTGAAGTGGCTTTTATTGGGGAGTAA
AAAGATAATTTAATAAATTGGAAAAAACACCCCAAATGCCTTGGCATTTT
GCCATAGTGTGCATCCTAAGAGATAAATATGAAACCCCTAAACTAAGTAC
CCACTACTTTGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAATTCCCAGCAACCACATGGTGGATCACAGTCATCTGTAATGGGGC
ACACATACCCTCTTCTGGTGTTAGTGACAGTGTACTCATATACAGTAGAT
AGATAGATAATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATCTTGTTGT
TGCTCCTCCTGCCCTTCTTGCCCTCCTGCGCCCCCCCCCCCCCCCTCTCT
TCTTTTTTCTCTTATGTGAGTTTCGTTGGCGCCCCCACCTCCCTCGCCCG
CCCCCCCCCCCCCCCCCCCCCCCCTTCTCATCTTCTCCCTCCTCCCCTCC
CTCCCCCTTCCCCCCTCTCCTCCACTCTCCCTCCTTCCTTCCTCTTCTCT
CCCCCCCCTCCCCCTCCTTTTTCCTCTCTCTTCTTACCCCCCCCTCTGTC
CTCCTTTTATTTCTCCTTTTCTCCTTCCTCAAACCCCTCCCCTCCCCCCC
CTCCCCTCCACCCCTCCCTCTCCCTCTCCCCTCTCCCCCCCCCCTTCTCC
TCCCCCACCACCCCCCTCTCCTACCACCTCCCCACCCCTCTCCCCCTATT
CCATTCACTCCCCTCCCTCTCCCTCTTCTCTTCCCCCACCTTCTCCTACC
TCCCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_n04.b1 MSMg01no092_n04.b1 CHROMAT_FILE:
MSMg01no092_n04.b1 PHD_FILE: MSMg01no092_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:48 2005
         (472 letters)



>mm_chr16_72773893_72774763
          Length = 871

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%), Gaps = 1/465 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattccagttgtgactgatttccagctagagctgattcagccagtggggagcctgcatg 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattccagttgtgaatgatttccagctagagctgattcagccagtggggagcctgcatg 267

                                                                       
Query: 68  ctgagaatctcagctctgccaaacactctttaactttccttgggcatgttctagttatat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctgagaatctcagctctgccaaacactctttaactttccttgggcatgttctagttatat 327

                                                                       
Query: 128 aacaccatgaaaaaataatctttgtgaaattgggaaggcttgtattaggagcaatggcta 187
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aacaccatgaaaaaa-aatctttgtgaaattgggaaggcttgtattaggagcaatggcta 386

                                                                       
Query: 188 tacttacttctgttgaacaaaccattgcaaagacgtttgtcagctttctcagggagggcg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacttacttctgttgaacaaaccattgcaaagacgtttgtcagctttctcagggagggcg 446

                                                                       
Query: 248 ttttctgaagctgtttgatttgcctgccatttttttttgttttgttttttgtttttttct 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttttctgaagctgtttgatttgcctgccatttttttttgttttgttttttgtttttttct 506

                                                                       
Query: 308 catttatcttctatcataatattttcatcccgtaatgttggatttttatcaactctctcc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 catttatcttctatcataatattttcatcccgtaatgttggatttttatcaactctctcc 566

                                                                       
Query: 368 aggacgtgatatttcagattatcatgtgacccctttaagagtcacatcagtattgggacc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aggacgtgatatttcagattatcatgtgacccctttaagagtcacatcagtattgggacc 626

                                                        
Query: 428 agtgggatggaaaacagaaaatcattttcttgttttgctgtggtt 472
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agtgggatggaaaacagaaaatcattttcttgttttgctgtggtt 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 871
Length adjustment: 10
Effective length of query: 462
Effective length of database: 861
Effective search space:   397782
Effective search space used:   397782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)