BAC Information

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BAC

Clone NameMSMg01-094C19
Chromosome16 (Build37)
Map Location 37,328,983 - 37,329,504
singlet/doubletsinglet
Overlap geneStxbp5l
Upstream geneLOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094C19.T7 (MSMg01no094_c19.b1)MSMg01-094C19.TJ (MSMg01no094_c19.g1)
ACCAG311418AG311419
length1,645702
length of high quality
(start - end)
---522 (73 - 594)
definitionCHROMAT_FILE: MSMg01no094_c19.b1 PHD_FILE: MSMg01no094_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:42 2005CHROMAT_FILE: MSMg01no094_c19.g1 PHD_FILE: MSMg01no094_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAACANTNNNAAANNNNNNATNNNTANNAANATTAAATAAAANTAT
TAAATANNNNNAANAANATAANNNATTAAAAAAAANNNTTATTNNTTTTT
NCATCTCNACATANGNTTTGTTTTGCGATATTTTTGTGCTACCCTGCTTC
AAACCATATAGTATAAGACTTTGTCGGCGGCGCCGTNACAGTATAGTGTT
NATCTTATGTTATAATGGGCGTGAGTGGCGGCACATACTTGAGGATATGA
CCGATATTATACGTCATCGATATCAATATATTTCTCACTGTCTCTACTCC
CACCCATCCCTAACTGTGATCACAGGCNAGTTGTTATAATAGGTGTCTTG
AGATGTGTGCATAATGCTGAACGGATGGCACATAGCTCTAATAATACTGC
ACATATTATCATACCCCGAATATCTGTGCTGTGTCGCGGCCGGTGTGCGA
GCGCCGTATCTCGTGTGCTGGCCACGAGCGCGTGTCGTTTGGTACTGCTT
TACGACGCAATCTGTCTTCTATCCCACAACATCCCATCAAGTACACCACA
CTCACCGTGCCACTAAGGCCCACGCCAATTCGCCGCAGTATCGCCNCACA
CACAATTCTCTCTATGTATGATGCGTTATACTGATAATTACACAACATCC
GTTATATGTCGTACGTACTATAGGATATTATATAGTCTACACACCGACTG
TACAGCACCGCTTGTACTCACTNTTGTCGCGCGATTATGCGCTTATTCTC
TCTCCTCCGTCGTACGATCGCGACCATGCACATTGCTACAGAAGCATGTT
TGCAATATATAATAGATCACGGGACGATTATAGTGACGTGACGTTGTGCG
TGAGTTGTGAGACGAACGTATGAGTCTAATGTGACGCTGTATGTAGTGAA
CGATGTCGAGCGCATGTATTGCGCCGCTGTCATATCTCTNGACGTGACAG
AGTCACTTCGAGGCATCTCTCGTGTCTGACATAGCGATATAATCGCGCGC
AATCACGTCTACGCTTATATTAACGTNAGTGCGCGCATAGTGCACTGTCG
TGTATGCACTCATGCACAACTGATCACTCCGACTGCCGTACCTCATTATA
CATTGCTATATATCTGTCGCGACCGACACACATATACCACGACCGCTCGC
CACTGATGTACTGTNCGTCGTTGTACGCTCGCTCCTTATTTAGAGACGTC
CACCTGTGTGTACGACTGANATCTAGTCTGTCTATATGTGTCGTGATAAT
ATACGCGCGCGCTCCGCATACGTGGCGGTCCGCGCTGATACTCTGTGATC
GACTGCGCGCNGCACGCTCGTGACGCACTGTGATGTGTATACGACTCTCA
CTATTAACTTATCTCGTGTGCCCACGTCGGACAGCTATGNCGTTCTCTGT
GCTCGTCTCTGCTTTCTCCGCCGCTATCTGAACCGTCTGTCTACAGCTAT
AGTATGTGATTATGCGTGCGCCACGCGCTATATATTCATCTCTACATTCT
TCTATACTAGTAAGTATAGTAGTAGGACCACCGTGATAGCTGAGGNATTG
TCACGATATATACGTGTGAAGACTACGCATGATGAGTCATATNGATAGTA
GTGTAATGCTGCTATGAAGATACTATACGATACTACATGATATGN
CATTGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGGACT
CAGAAATCCTCCTGCCTCTGCCTCTGGAGAGTGCTGGGATTAAAGGCGTG
TGCCACCACACCTGGCTGTATCTTTGATTTTTAATTATTGAATACATGAA
TATATATTGAGATACATTGGAGAAGGAACCCAGGTCTAAACATTAAACTC
TTTTATATTACGTGTGTACCTTATACATGTAGTCTGATGGTAATTTTGTA
CATTTTTTCAATGCTTTTACATTTTGAATGTAATCACAGTAGATCAGGTA
TGAAATTTTCTCTTTGTGGAAAAGGCTAACTTTTGGAACATCTGGGATTT
TGTATATTTGGATTATGGATCTTCAACCTGTACTTGATATAATTCTTTTT
GATATTATGATTTTAGATGTGTAACAATGCATTTGTATATATTATTACTG
ACATTCACATTTTTATTTCCTATATTAAAATTTAAATTTAAACTTAGATT
TAAATGTTAATATAGAAAATATTACATTTAATATAGGAAATATTACACTT
AATAAGAGAAAATATTTGCATATCAGAACATCCTCTTATTGTGACTCTAT
TATAATTTTAAAATTTATTTAATATTTTCTAAACCATTAAGCTTTCTACC
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_c19.g1 MSMg01no094_c19.g1 CHROMAT_FILE:
MSMg01no094_c19.g1 PHD_FILE: MSMg01no094_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:42 2005
         (522 letters)



>mm_chr16_37328762_37329683
          Length = 922

 Score =  986 bits (510), Expect = 0.0
 Identities = 519/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggcctcggactcagaaatcctcctgcctctgcctctggagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 actttgtagaccaggctggcctcggactcagaaatcctcctgcctctgcctctggagagt 684

                                                                       
Query: 61  gctgggattaaaggcgtgtgccaccacacctggctgtatctttgatttttaattattgaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 683 gctgggattaaaggcgtgtgccaccatacctggctgtatctttgatttttaattattgaa 624

                                                                       
Query: 121 tacatgaatatatattgagatacattggagaaggaacccaggtctaaacattaaactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tacatgaatatatattgagatacattggagaaggaacccaggtctaaacattaaactctt 564

                                                                       
Query: 181 ttatattacgtgtgtaccttatacatgtagtctgatggtaattttgtacattttttcaat 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 563 ttatattacgtgtgtaccttatacacgtagtctgatggtaattttgtacattttttcaat 504

                                                                       
Query: 241 gcttttacattttgaatgtaatcacagtagatcaggtatgaaattttctctttgtggaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcttttacattttgaatgtaatcacagtagatcaggtatgaaattttctctttgtggaaa 444

                                                                       
Query: 301 aggctaacttttggaacatctgggattttgtatatttggattatggatcttcaacctgta 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggttaacttttggaacatctgggattttgtatatttggattatggatcttcaacctgta 384

                                                                       
Query: 361 cttgatataattctttttgatattatgattttagatgtgtaacaatgcatttgtatatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttgatataattctttttgatattatgattttagatgtgtaacaatgcatttgtatatat 324

                                                                       
Query: 421 tattactgacattcacatttttatttcctatattaaaatttaaatttaaacttagattta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tattactgacattcacatttttatttcctatattaaaatttaaatttaaacttagattta 264

                                                     
Query: 481 aatgttaatatagaaaatattacatttaatataggaaatatt 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatgttaatatagaaaatattacatttaatataggaaatatt 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)