BAC Information

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BAC

Clone NameMSMg01-095C17
Chromosome16 (Build37)
Map Location 28,603,254 - 28,739,052
singlet/doubletdoublet
Overlap geneFgf12
Upstream genenone
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095C17.T7 (MSMg01no095_c17.b1)MSMg01-095C17.TJ (MSMg01no095_c17.g1)
ACCAG312147AG312148
length717715
length of high quality
(start - end)
319 (39 - 357)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no095_c17.b1 PHD_FILE: MSMg01no095_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:06 2005CHROMAT_FILE: MSMg01no095_c17.g1 PHD_FILE: MSMg01no095_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,738,740 - 28,739,052)(28,603,254 - 28,603,540)
sequence
CAGAATTTGCGGCGCTAAACGACTCCTATATCGAGAGATCCGCGGAATTC
ACACTTGCTTACTATTTAAAACCTTTTTGGTGGTGCTGAGGATGAGCCCA
GAGTCTTCAGCAATGTTAGGCTCATGGTCTACCACCAAGCAGCACCCACA
ACCTTGGCTGTTTCAGTGAACTCCACTCATAAACTAGTAATCATCACCTT
TCATTGTAAGTTAACATGAGCCACACTACAAATGTATGGCTTTCAGATCA
AAGCCATATATCCACTCCAGGAAGACAGACCCTGCCCTGCCAAACTGAAT
GACCATGTTCAATGGGTGAAGCCCGGAAGAGTGCCTTGTATGGCGGAGGT
CTCTGACTGTTTTGGCGAACCCCCCTGAGTAAAGTTTTTCAAATGAAGGT
CAGCAGGTGGCCTTCATCCCAGAACTCTAAGGGGTGGTTAGACAATTGAG
ACGAGCAGCTTGATCTTTTCTCTGAGCAAAGATCTTTTGATCTTCATTGA
TCATTGATTCAAGTCTGAGAAGATAAGGTGGCTGTCCTGGACACACGGCA
GCTTCCTGGGATACTCACCCTTCAGAAATGACCCATGAGTGTAGAAAGGG
TCCCTTGTGTGTGACTTTTGTTCATTTTGCTCATTTTTCTTGCCTCGGCT
ATAGTTGGGATCCTTCCCACCGGTGTATTTCCTTCGCCCTTCTCCCAATT
TTTTCTTTTAAACAGAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAATTGCCTCTGGAAATATATCTCTTTC
ACCCAAATTGTCATCTGGAGAGAAAAAAGATGCCTCTGGGGAGTCAATAT
GAAACTGTGGAGAAGTGGGTCACCATATGTGGAGTGCTGTTGGGGATTTG
ATTTTAGCTTTCTTATCAGTGCAGAGTGAGTAAGCTCATATTATTCCCAC
CTGCAAAGGAACAGCCTTTGTGAACTACATTTTCATCGGATAGACACACA
CATCCACTTTCTATAAGAATGCTCAGCCCATCTGCTCAAATTTAAAAATA
TAAATTGAATAGTCTCTCACACTGCCTCCGCCTTGTAAAATGTCTATCAC
CAACTCTTCATTGCAGCATGATGCATCTTCTCTGATGAGCTATGTCCTTT
CTCCCTGTTAATAATCTCACTGGTTCTCCTGATGTACCTGCTCCTTGCTA
CAGTTTTGTAGATACTGATCTTGAGAGTGCTGGGCTTCAGTCAAGGGTGC
GGCTCAGAGGTGGAACCTTCACCTGGTGTCCTTGATCTCAATGCTAACTG
AGAAAAATAAAGCAAACGGCCTCAACATCATTTTCATCTCTGACATGTTT
TCATTTTGATTACAAAAATGAATGTCTCAGGGCAATATGGAGTCTGTTTC
TGACAAAAGAGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_c17.b1 MSMg01no095_c17.b1 CHROMAT_FILE:
MSMg01no095_c17.b1 PHD_FILE: MSMg01no095_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:06 2005
         (319 letters)



>mm_chr16_28738425_28739143
          Length = 719

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcacacttgcttactatttaaaacctttttggtggtgctgaggatgagcccagagt 66
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaattcacacttgcttagtatttaaaacctttttggtggtgctgaggatgagcccagagt 569

                                                                       
Query: 67  cttcagcaatgttaggctcatggtctaccaccaagcagcacccacaaccttggctgtttc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttcagcaatgttaggctcatggtctaccaccaagcagcacccacaaccttggctgtttc 509

                                                                       
Query: 127 agtgaactccactcataaactagtaatcatcacctttcattgtaagttaacatgagccac 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agtgaactccactcataaactagtaatcatcacctttcattgtaagttaacatgagccac 449

                                                                       
Query: 187 actacaaatgtatggctttcagatcaaagccatatatccactccaggaagacagaccctg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 actacaaatgtatggctttcagatcaaagccatatatccactccaggaagacagaccctg 389

                                                                       
Query: 247 ccctgccaaactgaatgaccatgttcaatgggtgaagcccggaagagtgccttgtatggc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccctgccaaactgaatgaccatgttcaatgggtgaagcccggaagagtgccttgtatggc 329

                        
Query: 307 ggaggtctctgac 319
           |||||||||||||
Sbjct: 328 ggaggtctctgac 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no095_c17.g1 MSMg01no095_c17.g1 CHROMAT_FILE:
MSMg01no095_c17.g1 PHD_FILE: MSMg01no095_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:06 2005
         (290 letters)



>mm_chr16_28603054_28603743
          Length = 690

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattgcctctggaaatatatctctttcacccaaattgtcatctggagagaaaaaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattgcctctggaaatatatctctttcacccaaattgtcatctggagagaaaaaagatg 260

                                                                       
Query: 61  cctctggggagtcaatatgaaactgtggagaagtgggtcaccatatgtggagtgctgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctggggagtcaatatgaaactgtggagaagtgggtcaccatatgtggagtgctgttg 320

                                                                       
Query: 121 gggatttgattttagctttcttatcagtgcagagtgagtaagctcatattattcccacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggatttgattttagctttcttatcagtgcagagtgagtaagctcatattattcccacct 380

                                                                       
Query: 181 gcaaaggaacagcctttgtgaactacattttcatcggatagacacacacatccactttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaaggaacagcctttgtgaactacattttcatcggatagacacacacatccactttct 440

                                                          
Query: 241 ataagaatgctcagcccatctgctcaaatttaaaaatataaattgaa 287
           |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ataagaatgctcagcccatctgctcacatttaaaaatataaattgaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)