Query= MSMg01no095_j03.b1 MSMg01no095_j03.b1 CHROMAT_FILE:
MSMg01no095_j03.b1 PHD_FILE: MSMg01no095_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:38 2005
(607 letters)
>mm_chr16_25947220_25948226
Length = 1007
Score = 1114 bits (576), Expect = 0.0
Identities = 593/604 (98%), Gaps = 9/604 (1%)
Strand = Plus / Plus
Query: 4 ggaattctttgctggcacacttggctgacagcaagtctgctcatccctgcctcttcctgt 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgctgggacacttggctgacagcaagtctgctcatccctgcctcttcctgt 263
Query: 64 cctccccccacccctacccccaactgcagaggaaagcagcaccagcccctctccacagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctccccccacccctacccccaactgcagaggaaagcagcaccagcccctctccacagcc 323
Query: 124 cagagaccttgcctgagttctggagataacaatatgcatagcaccttttgtatgctgcta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagaccttgcctgagttctggagataacaatatgcatagcaccttttgtatgctgcta 383
Query: 184 aagaaaggcttcaagggtcggtgctgatatcccacagtcctgcacccgggttaatccacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagaaaggcttcaagggtcggtgctgatatcccacagtcctgcacccgggttaatccacc 443
Query: 244 cgttaagtcatttcagcctattccgcaaacagctgcttctcttgcttccacgcctgtgct 303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 cgttaagtcatttcagcctattccgcaaacagctgcttctcttgcttccacacctgtgct 503
Query: 304 gccccgccctttcctgctttgaccacctctgtttcttttctagaactcatgtggcgtctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccccgccctttcctgctttgaccacctctgtttcttttctagaactcatgtggcgtctt 563
Query: 364 cacattccagactgaatgggggaggccaagcatggagggtctgtgccctctgcactatgc 423
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 564 cacattccagactgaatgggggaggccaagcatggagggtctgt---------actatgc 614
Query: 424 ttttacttgtcttgcgaggttagaatgcattgggttttagatattgcaactaggatccct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttttacttgtcttgcgaggttagaatgcattgggttttagatattgcaactaggatccct 674
Query: 484 ttggaagacctaggacattaaacatgtggacttagtgggcttgaacactcctaaaggtgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttggaagacctaggacattaaacatgtggacttagtgggcttgaacactcctaaaggtgt 734
Query: 544 tatctacctttaaccatctgtgatcatgtaaattctgactcgatataggatgacctgttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tatctacctttaaccatctgtgatcatgtaaattctgactcgatataggatgacctgttc 794
Query: 604 aaga 607
||||
Sbjct: 795 aaga 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_j03.g1 MSMg01no095_j03.g1 CHROMAT_FILE:
MSMg01no095_j03.g1 PHD_FILE: MSMg01no095_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:38 2005
(288 letters)
>mm_chr16_26097410_26098097
Length = 688
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Minus
Query: 1 atcatctgaaaataattgatttgggttttgtaaaagtgccaggactctagtggagattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atcatctgaaaataattgatttgggttttgtaaaagtgccaggactctagtggagattgc 427
Query: 61 agcatgactgtgccaagactcagacaagggccagataaaggtaaaagatacaattaacaa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agcatgaccgtgccaagactcagacaagggccagataaaggtaaaagatacaattaacaa 367
Query: 121 atgagtaagaaacagggaaacatgtggaagttaattgacccaatctttctattcttgctc 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 366 atgagtaagaaacagggaaacatgtggaagttaactgacccaatctttctattcttgctc 307
Query: 181 gaatcaatattaagaattactcttcttgctggatgctaaatattttgctttacctcttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaatcaatattaagaattactcttcttgctggatgctaaatattttgctttacctcttcc 247
Query: 241 aaaatcaatagtcttgcatgttaaaatcagcacacaattaagaatc 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaaatcaatagtcttgcatgttaaaatcagcacacaattaagaatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
