CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCCATTTGATTNACATTTATTATTCCAGTATAAAATAATTTGCTTA
TGACACAAAGCATACCCGGAACCTTAGAGGAACATGTCAGATTGAGTTAT
GTAGTGCTCAGAAAACTTACTATAAAGAGATAATGAACTCATACTTTTGG
TTTTGAACATCTTACAGTTTGTTTGACAGCTTGTACAATCATATACAATA
TGAAAATTGGTCCTGTTTCTGTGTCAATAAATCTTTATTCCAAACAAATT
TTATAAACATGAAAATTTACATTAATTCTATTTTATTTGGAACACTATAA
TTTTCTTTTGAATTTTTAACTATTACAATTGTCTAAAGTTGAAATAGGGA
ATTAGCTCTGGTTAATAGTACTGGCTTCTTTACGAGAGGACCCAGTTTTA
ATCTTTCAGCTTCTATATATCGACTGTTAGCTGCCAAGAGAGAGAGAAGC
AATTAAACATTCATACCCGGTGGCAAAACCTATGAACTAAGACAATGAAA
AGCATGACAAGGTATCTGTAAAGACACAATAATTGTTATCCACATATCTC
TAGGAACCATAAAATGTCTCATTGGATTTCAGGACCACTTGACATGAGAA
ACCAGCATAGCTGGTAAAAAAACGTAACTATCTTTCCAGGACTAGTGAGG
TCATGACCATTAT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTATTTTTTCTTTATTTCTTCCCTG
ACAAAGTTATCATTGAGTAAAGAGTTGTTCAGATTCCATGTGTATGTGGG
CTTTCTGTGGTTTCTGCAGTAATTGAAGACCAGCCTTAGGCCGTGGTGAT
CTGATAGGATACAGGGTACTATTTCATCTTCTTGTATCTGTTGAGGGTTG
TTTTGTGACCAATTATAAGGTCGATTTTGGAGAAGGTACCACGAAGTGCT
GAGAATAAGATGTATGCTTTTGTTTTAGGGTGAAATATTCTGTGGATATC
CGTTAAATCTCTTAGTTTCACTGTGTCTCAGTTTAGTTTCTGTTTCAATG
ACCTGTCCATTGGTGATAGTGGGTGTTGAAATTTCCAACTATTATTGTGT
GGGGTTCAATGTGTAATTTGAGTTTTAGTAAAGTTTCTTCTATGAATTTG
GATGCTCTTGCATTTGGNGCATTGGTGATCAGAATTGAGACTTACTCTTG
GTGGATTTTCCCCTTGATGAATATGAACATTTTTTAAAGGAGTCTATTAT
CTTCATCCTTCTTGATAACTTTTGATTGAAAGTCTTATTTATTGAAAATT
ACGTAGGTTACTCCTGCTTGTTTCCTGGATGCCTTCTTCCTGGCAAAAGT
TTTCTCCCGGCTACCTA

Query= MSMg01no095_n05.b1 MSMg01no095_n05.b1 CHROMAT_FILE:
MSMg01no095_n05.b1 PHD_FILE: MSMg01no095_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:58 2005
         (670 letters)



>mm_chr16_61384327_61385397
          Length = 1071

 Score = 1222 bits (632), Expect = 0.0
 Identities = 658/667 (98%), Gaps = 1/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttccatttgattn-acatttattattccagtataaaataatttgcttatgaca 62
           |||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||
Sbjct: 204 ggaattcttccatttgattagacatttattattccagtataaaataatttgcttataaca 263

                                                                       
Query: 63  caaagcatacccggaaccttagaggaacatgtcagattgagttatgtagtgctcagaaaa 122
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaagcatacccggaaccttagcggaacatgtcagattgagttatgtagtgctcagaaaa 323

                                                                       
Query: 123 cttactataaagagataatgaactcatacttttggttttgaacatcttacagtttgtttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 cttactataaagagataatgaactcatacttttggttttgaacatcttacagtttgtttc 383

                                                                       
Query: 183 acagcttgtacaatcatatacaatatgaaaattggtcctgtttctgtgtcaataaatctt 242
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 acagcttgtacaatcatatacaatatgaaaattggttctgtttctgtgtcaataaatctt 443

                                                                       
Query: 243 tattccaaacaaattttataaacatgaaaatttacattaattctattttatttggaacac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattccaaacaaattttataaacatgaaaatttacattaattctattttatttggaacac 503

                                                                       
Query: 303 tataattttcttttgaatttttaactattacaattgtctaaagttgaaatagggaattag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tataattttcttttgaatttttaactattacaattgtctaaagttgaaatagggaattag 563

                                                                       
Query: 363 ctctggttaatagtactggcttctttacgagaggacccagttttaatctttcagcttcta 422
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 ctctggttaatagcactggcttctttacgagaggacccagtttcaatctttcagcttcta 623

                                                                       
Query: 423 tatatcgactgttagctgccaagagagagagaagcaattaaacattcatacccggtggca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatatcgactgttagctgccaagagagagagaagcaattaaacattcatacccggtggca 683

                                                                       
Query: 483 aaacctatgaactaagacaatgaaaagcatgacaaggtatctgtaaagacacaataattg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaacctatgaactaagacaatgaaaagcatgacaaggtatctgtaaagacacaataattg 743

                                                                       
Query: 543 ttatccacatatctctaggaaccataaaatgtctcattggatttcaggaccacttgacat 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttatccacatatctctaggaaccataaaatgtctcattggatttcaggaccacttgacat 803

                                                                       
Query: 603 gagaaaccagcatagctggtaaaaaaacgtaactatctttccaggactagtgaggtcatg 662
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 804 gagaaaccagcatagctggtaataaaacgtaactatctttccaggactagtgaggtcatg 863

                  
Query: 663 accatta 669
           |||||||
Sbjct: 864 accatta 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space:   700260
Effective search space used:   700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)